Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a16
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    30   0.014
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.014
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +3

Query: 300 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNE 479
           NR+    + +FRN+ +L  L L  N I G + R  ++  P          L+ LNL  N+
Sbjct: 464 NRISNFYNGSFRNLDQLTGLRLIGNDI-GNLSRGMLWDLPN---------LQILNLARNK 513

Query: 480 IHSLDRYLFK 509
           +  ++RY F+
Sbjct: 514 VQHVERYAFE 523



 Score = 27.9 bits (59), Expect = 0.075
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 273 NRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 383
           NR+ +S   N +  I+  AFRN   L  LDLS N+++
Sbjct: 410 NRLTLS--GNAIASIDPLAFRNCSDLKELDLSGNELT 444



 Score = 26.2 bits (55), Expect = 0.23
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +3

Query: 300 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNE 479
           N + ++    F  + +L+ L+L+ N++    +    F G         I L  LNL YN 
Sbjct: 295 NGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGL--------IRLIVLNLSYNM 346

Query: 480 IHSLDRYLFK 509
           +  +D  +FK
Sbjct: 347 LTHIDARMFK 356



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +3

Query: 279 IAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALET 458
           I ++   N +  I+   F+++  L  LDL NN I    + S  F   Y         L T
Sbjct: 338 IVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDR--IESNAFLPLYN--------LHT 387

Query: 459 LNLGYNEIHSLDRYLF 506
           L L  N++ ++   LF
Sbjct: 388 LELSDNKLRTVGAQLF 403



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 324 DAFRNIPRLVYLDLSNNKIS 383
           DA R++  L  LDL  N+IS
Sbjct: 448 DALRDLALLKTLDLGENRIS 467


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 349 NRGMFLKASSSISITRFDLKLIAILFPGI 263
           N G FLKA  +  +TR D +  +++FP +
Sbjct: 132 NEGQFLKAFVAAVLTRQDTQ--SVIFPPV 158


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 93  PCDISVEDTSNLTLNCSRRDI 155
           P D+SVE   ++ L+C  + +
Sbjct: 716 PTDVSVERNKHVALHCQAQGV 736


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 93  PCDISVEDTSNLTLNCSRRDI 155
           P D+SVE   ++ L+C  + +
Sbjct: 712 PTDVSVERNKHVALHCQAQGV 732


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = +3

Query: 198 KDGHVLVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSN 371
           K+ ++     N+++   ++ +   G+  AI   SN    ++  AF N+P+ + +  +N
Sbjct: 476 KEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYNN 533


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = +3

Query: 198 KDGHVLVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSN 371
           K+ ++     N+++   ++ +   G+  AI   SN    ++  AF N+P+ + +  +N
Sbjct: 476 KEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYNN 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,457
Number of Sequences: 438
Number of extensions: 2756
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)