Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a14
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 149 2e-36
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 146 7e-36
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 140 4e-34
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 140 8e-34
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 54 5e-08
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 38 0.004
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 27 6.5
03_06_0131 - 31900700-31900992,31901039-31901720 27 6.5
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 27 6.5
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997 27 6.5
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 8.7
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 27 8.7
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 27 8.7
03_06_0105 + 31675083-31675313,31676171-31676815 27 8.7
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 27 8.7
02_01_0176 + 1207792-1208081,1208212-1208329,1208495-1208668,120... 27 8.7
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 149 bits (360), Expect = 2e-36
Identities = 73/131 (55%), Positives = 86/131 (65%), Gaps = 2/131 (1%)
Frame = +2
Query: 119 ITMPAKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGC 292
+TM KAV VL V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC
Sbjct: 117 LTM-VKAVVVLGSSEIVKGTIHFVQEGD-GPTTVTGSVSGLKPGLHGFHIHALGDTTNGC 174
Query: 293 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRT 472
S G H+NP ++HG P RH GDLGN+ A ED GV + + DSQI L GPNSIIGR
Sbjct: 175 MSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGRA 233
Query: 473 LVVHADPDDLG 505
+VVHADPDDLG
Sbjct: 234 VVVHADPDDLG 244
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 146 bits (355), Expect = 7e-36
Identities = 73/126 (57%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Frame = +2
Query: 134 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 307
KAV VL V GT+FF Q+ + P V+G V GL G HGFHVH GD TNGC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGD-GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 308 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVVHA 487
HFNP ++HG P RH GDLGNI A D GV V++ DSQI L G +SIIGR +VVHA
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHA 120
Query: 488 DPDDLG 505
DPDDLG
Sbjct: 121 DPDDLG 126
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 140 bits (340), Expect = 4e-34
Identities = 70/126 (55%), Positives = 79/126 (62%), Gaps = 2/126 (1%)
Frame = +2
Query: 134 KAVCVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 307
KAV VL+G V G V Q D++ P V+ V GLT G HGFH+HEFGD TNGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 308 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVVHA 487
HFNP HG P VRH GDLGNI A GV + +I D QI L GPNS++GR VVH
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVVHE 170
Query: 488 DPDDLG 505
DDLG
Sbjct: 171 LEDDLG 176
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 140 bits (338), Expect = 8e-34
Identities = 66/115 (57%), Positives = 75/115 (65%)
Frame = +2
Query: 161 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 340
V+G + F Q V G V GL G HGFH+H FGD TNGC S G HFNP + HG
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 341 PSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVVHADPDDLG 505
PS RHVGDLGNI A +D GV + I D QISL GP+SI+GR +VVHAD DDLG
Sbjct: 83 PSDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLG 136
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 54.4 bits (125), Expect = 5e-08
Identities = 39/127 (30%), Positives = 59/127 (46%)
Frame = +2
Query: 116 NITMPAKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCT 295
N + + AV +G V V Q +V GL+ GKHG+ ++EFGD T G
Sbjct: 160 NDFLVSAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAE 219
Query: 296 SAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTL 475
S G +NP P +GDLG +EA E G + S ++ + +IGR++
Sbjct: 220 STGKVYNPSDYRSNKP------LGDLGTLEAGE-KGEAQFSASKEKLKV---VDLIGRSI 269
Query: 476 VVHADPD 496
++A D
Sbjct: 270 ALYATED 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 200 SPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 304
S + V V GL HGFHVH G TNGC G
Sbjct: 35 SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 446 GPNSIIGRTLVVHADPDDLG 505
GP + +GR L+ +DP+D+G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIG 1067
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 368 DLGNIEAIEDSGVTKVSIXDSQISLHGPNS 457
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +2
Query: 275 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPN 454
D TS GAH +P + H PSS + + + S T VS+ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
Length = 387
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 272 GDNTNGCTSAGAHFNPEKQDHGGPSSAVRHV 364
G+N NG S G H N + G P S + +V
Sbjct: 111 GNNNNGYRSQGVHANESWRIPGQPDSCIENV 141
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.1 bits (57), Expect = 8.7
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = -1
Query: 477 TKVRPMMLLGP*REIWESXIDTLVTPESSIASMLPRSPTWRTAELGPP*SCFSGLK*APA 298
TK +P+ + G S +D S AS + SP+ R+ P S S + +P
Sbjct: 127 TKSKPIRISG------SSTVDNTQRSSRSSASPIRLSPSPRSMSRTRPSSAAS--RSSP- 177
Query: 297 DVQPFVLSPNSCTWKPCL-PLVKPWTSPETTTGDFSSC*SKKTVPLTSPRSTQT 139
PF L P + +W+P P K T P + S+ + P + R T
Sbjct: 178 ---PFALQPPTPSWRPSTPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMST 228
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 168 ELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKI--MVV 341
+L SI R+ ++++ + + S A R+ VS C L+ H +LIS +++ + MVV
Sbjct: 388 DLRPSILRLINNIIGYWKDSEA--RIKVVSFCHMLIQLAISTHNDKLISFVQDNLIPMVV 445
Query: 342 PVLLY 356
L++
Sbjct: 446 RCLIF 450
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 209 VVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRH 361
++S V+ +GK G ++H GC G + + H P++A H
Sbjct: 488 LISNAVKFTHEGKVGINLHVLDKQLPGCRIEGGQLH--SKAHSAPAAAAEH 536
>03_06_0105 + 31675083-31675313,31676171-31676815
Length = 291
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 257 HVHEFGDNTNGCTSAGAHFNPEKQDHGGP 343
HVH + T GC + AH +GGP
Sbjct: 219 HVHPYTPYTFGCVTPLAHLTHSGYGYGGP 247
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 284 NGCTSAGAHFNP---EKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDS--QISLHG 448
N C HF+ E++DH G +A RH D D+G+ + +S + G
Sbjct: 233 NPCRFNIGHFDSVQDEQKDHAGFQTAYRHCSDWN--RCTNDTGIVGNYLANSSGETCNVG 290
Query: 449 PNSIIGR 469
NSI GR
Sbjct: 291 ENSITGR 297
>02_01_0176 +
1207792-1208081,1208212-1208329,1208495-1208668,
1209588-1209751,1209861-1209948,1210125-1210178,
1210798-1210884
Length = 324
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +2
Query: 173 VFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSA 352
V+ ++Q EK + G + KGKH H +E T A E++D G PS+A
Sbjct: 30 VWLEEQYEKVEKIGEGTYGVVYKGKHR-HTNE--------TIALKKIRLEQEDEGVPSTA 80
Query: 353 VRHVGDLGNIE 385
+R + L ++
Sbjct: 81 IREISLLKEMQ 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,808
Number of Sequences: 37544
Number of extensions: 274386
Number of successful extensions: 725
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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