Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a14
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 166 9e-42
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 166 9e-42
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 166 9e-42
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 166 9e-42
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 153 9e-38
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 129 1e-30
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 129 1e-30
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 129 1e-30
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.001
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 30 0.84
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 30 0.84
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 29 1.9
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 29 1.9
Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z66520-10|CAA91391.2| 600|Caenorhabditis elegans Hypothetical p... 27 7.8
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 27 7.8
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 166 bits (403), Expect = 9e-42
Identities = 72/128 (56%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
Frame = +2
Query: 125 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 301
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 302 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVV 481
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 482 HADPDDLG 505
HA DDLG
Sbjct: 120 HAGQDDLG 127
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 166 bits (403), Expect = 9e-42
Identities = 72/128 (56%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
Frame = +2
Query: 125 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 301
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 302 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVV 481
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 482 HADPDDLG 505
HA DDLG
Sbjct: 120 HAGQDDLG 127
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 166 bits (403), Expect = 9e-42
Identities = 72/128 (56%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
Frame = +2
Query: 125 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 301
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 302 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVV 481
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 482 HADPDDLG 505
HA DDLG
Sbjct: 120 HAGQDDLG 127
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 166 bits (403), Expect = 9e-42
Identities = 72/128 (56%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
Frame = +2
Query: 125 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 301
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 82
Query: 302 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVV 481
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 83 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 141
Query: 482 HADPDDLG 505
HA DDLG
Sbjct: 142 HAGQDDLG 149
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 153 bits (370), Expect = 9e-38
Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
Frame = +2
Query: 134 KAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 310
+AV VLRG V GTV+ Q+ E GE++GL+ G HGFH+H++GD+T+GCTSAG H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 311 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVVHAD 490
FNP K +HGG S VRHVGDLGN+EA D GV K+ D +SL G N++IGR++VVH D
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGAD-GVAKIKFSDKVVSLFGANTVIGRSMVVHVD 142
Query: 491 PDDLG 505
DDLG
Sbjct: 143 RDDLG 147
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 129 bits (312), Expect = 1e-30
Identities = 62/116 (53%), Positives = 78/116 (67%)
Frame = +2
Query: 158 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 337
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 338 GPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVVHADPDDLG 505
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLG 151
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 129 bits (312), Expect = 1e-30
Identities = 62/116 (53%), Positives = 78/116 (67%)
Frame = +2
Query: 158 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 337
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 338 GPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVVHADPDDLG 505
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLG 151
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 129 bits (312), Expect = 1e-30
Identities = 62/116 (53%), Positives = 78/116 (67%)
Frame = +2
Query: 158 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 337
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 338 GPSSAVRHVGDLGNIEAIEDSGVTKVSIXDSQISLHGPNSIIGRTLVVHADPDDLG 505
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLG 151
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 131 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 310
A A+ + R F Q + + + GEV L G+H +H+FGD++ GC+ GA
Sbjct: 884 AVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 943
Query: 311 FN 316
F+
Sbjct: 944 FS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 131 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 310
A A+ + R F Q + + + GEV L G+H +H+FGD++ GC+ GA
Sbjct: 675 AVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 734
Query: 311 FN 316
F+
Sbjct: 735 FS 736
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 30.3 bits (65), Expect = 0.84
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +3
Query: 162 LAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKIMV- 338
LA+LF +SR + L + + +N VS+ +V Q +++ + N++ +
Sbjct: 206 LAQLFEDVSREEGQLNQLFDNKQQHPVINNVSLSEGIVYNQANLTEMQEMRDSCNQVSIS 265
Query: 339 -VPVLLYAMSATSVTLRQLKTLESLKYQSXIPRSLF 443
+P A T + +T+E +P +F
Sbjct: 266 TIPTTSTAQPETLFNVTDSQTVEQWLPTEVVPNDVF 301
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 30.3 bits (65), Expect = 0.84
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +3
Query: 162 LAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKIMV- 338
LA+LF +SR + L + + +N VS+ +V Q +++ + N++ +
Sbjct: 296 LAQLFEDVSREEGQLNQLFDNKQQHPVINNVSLSEGIVYNQANLTEMQEMRDSCNQVSIS 355
Query: 339 -VPVLLYAMSATSVTLRQLKTLESLKYQSXIPRSLF 443
+P A T + +T+E +P +F
Sbjct: 356 TIPTTSTAQPETLFNVTDSQTVEQWLPTEVVPNDVF 391
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +3
Query: 114 TISQCPPKQFAYFVVMLAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVA 293
T+ +C + F+ + S S M +HL+ + + + T ++ +L + A
Sbjct: 1354 TLMKCVSEAVKLFISLSHCFMGSRSLMNAHLIAVMNKGNHEALILTSAIIGSLAKIERFA 1413
Query: 294 HQLELISTLKNKI-MVVPVLLYAMSATSVTLRQLKTLESL 410
HQL +T + M+ +LL + TL L + ++
Sbjct: 1414 HQLLCSTTTTERFPMLSSLLLKHFNCEKETLASLTSFPNI 1453
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +3
Query: 114 TISQCPPKQFAYFVVMLAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVA 293
T+ +C + F+ + S S M +HL+ + + + T ++ +L + A
Sbjct: 1314 TLMKCVSEAVKLFISLSHCFMGSRSLMNAHLIAVMNKGNHEALILTSAIIGSLAKIERFA 1373
Query: 294 HQLELISTLKNKI-MVVPVLLYAMSATSVTLRQLKTLESL 410
HQL +T + M+ +LL + TL L + ++
Sbjct: 1374 HQLLCSTTTTERFPMLSSLLLKHFNCEKETLASLTSFPNI 1413
>Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical
protein T19C4.2 protein.
Length = 313
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 346 TGTTMILFFRVEMSSS*CATVCVVTKFVHMETVFTLSQALDLSRN 212
T TT I F+ +++SS C T + + ++ +E FTL+ L N
Sbjct: 48 TLTTGITFYTLKLSSVTCQTCALSSIYLMLENNFTLNIMYSLMYN 92
>Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical
protein K05C4.9 protein.
Length = 724
Score = 27.1 bits (57), Expect = 7.8
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 162 LAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKN-KIMV 338
L+ELF S+ + +LF L V+ S+C ++ +A L +S LKN + +
Sbjct: 151 LSELFPSLKTLNVSNILFENDELLRLCVSFPSLCVLDISGTNIA-SLHGLSNLKNLQELS 209
Query: 339 VPVLLYAMSATSVTLRQLKTLESL 410
+ L +A + V L QL L+ L
Sbjct: 210 IRYLEFANANNLVDLFQLTNLKVL 233
>Z66520-10|CAA91391.2| 600|Caenorhabditis elegans Hypothetical
protein F49E12.6 protein.
Length = 600
Score = 27.1 bits (57), Expect = 7.8
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +3
Query: 186 SRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKIMVVPVLLYAMS 365
SR + L L +R + TV T V +TVA ++ + I+ V L AM
Sbjct: 94 SRKEKSLGLLCQRFLIAINEETVGSSTREVHLETVARKMNVEKRRIYDIVNVMEALDAMQ 153
Query: 366 ATSVTLRQLKTLESL 410
T+ + Q + LESL
Sbjct: 154 KTNKSYYQWQGLESL 168
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 237 VKPWTSPETTTGDFSSC*SKKTVPLTSPRSTQTALA 130
V+P T+P TTT ++ K T T P ST TA+A
Sbjct: 1150 VRPPTTPTTTTSTTTTTTPKLTTTSTLP-STSTAIA 1184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,563,091
Number of Sequences: 27780
Number of extensions: 238151
Number of successful extensions: 711
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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