Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a13
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.23 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.40 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   0.70 
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    27   1.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   2.1  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   4.9  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    25   4.9  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   6.5  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   8.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   8.6  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 328 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 212
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = +2

Query: 131 HGNGYEPIDNRPYIVNPPK--DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 292
           +GN      N       PK  DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 98  YGNNRTYYKNSQGYRRKPKRDDYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 141 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 290
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 182 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 280
           PK   PN N  +P  NG   + PP    Y KPT
Sbjct: 46  PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 214  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 321
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 90  PTLK*TXXXXXXLDTETATNLLTTAR-TSLILPKITTLMETATNL--STTVHITWTLP 254
           P+   T        TET+T+ +T+   TS++ P  T+   T T +  +T+++ T T+P
Sbjct: 40  PSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVP 97


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 185 KDYNPNGNGYEPIDNGAYYVDPPQGRP 265
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 131 HGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGA 235
           HG G+   DN   ++ PP  +    NG +  D  A
Sbjct: 321 HGPGWRSGDNNKKVIVPPNFHQVKLNGSDGYDKDA 355


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 135 ETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 287
           ET T  +    T   + + TT+      + T +  T T P  + T+ LP++
Sbjct: 105 ETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 152 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 238
           +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 137  NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 289
            N Y PI      VNP   Y P+G        G+  V PP+ +P  +  P P
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHG--------GSQIVPPPK-QPANRVVPLP 1023


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,296
Number of Sequences: 5004
Number of extensions: 35252
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)