Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a13
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    34   0.049
AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical ...    28   2.4  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    27   7.4  
Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical ...    26   9.8  
AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical ...    26   9.8  
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ...    26   9.8  
AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical...    26   9.8  

>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 33.9 bits (74), Expect = 0.049
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +3

Query: 75  LCWLWPTLK*TXXXXXXLDTETATNLLTTARTSLILPKITTLMETATNLSTTVHI---TW 245
           LC+LW  L  T        T T T+ + T  T++++   TT        +TTV +   T 
Sbjct: 179 LCYLWVPL--TTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGTTT 236

Query: 246 TLPKADLTSSLPLS 287
           T+P  + T++ PL+
Sbjct: 237 TVPTNETTTTSPLN 250


>AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical
           protein F49F1.7 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = +3

Query: 132 TETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLP 281
           TET     TT          TT     T  STTV  T T PK   T S P
Sbjct: 159 TETTETTETTKAIKTTKTTETTKATKTTTPSTTVKTTTTKPKPPCTDSSP 208


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 146 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 232
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 174 LILPKITTLMETATNLSTTVHITWTLPKAD 263
           +I+   TT +++ T+LS   + TW LPK D
Sbjct: 18  VIVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 143 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 283
           Y+P +  P     P    P   GY P   G YY    QG PY+   P
Sbjct: 3   YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47


>AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical
           protein R52.6 protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 126 LDTETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 251
           L  E  T ++TT  TS +  K+   M  AT       + WTL
Sbjct: 48  LPYEETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89


>Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical
           protein T27E7.1 protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +2

Query: 125 PGHGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PFPG 292
           P  G  + P  N   + N P  +     GY   P         PP+G  Y++P   P+  
Sbjct: 36  PQPGASFPP--NMNPVTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPYKP 93

Query: 293 ARGGK 307
            +GGK
Sbjct: 94  GKGGK 98


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 206  NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 295
            NGY   +NG    +P Q  P   P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = +2

Query: 134 GNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 301
           G G  P    P  V PP  Y   P  +G    DNGA     P G PY    P P   G
Sbjct: 357 GGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYPSDVPAPYPSG 411


>Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical
           protein F31B9.4 protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 132 TETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP 254
           T  A N+ TT  T+ I P   T     T  +TTV  T T P
Sbjct: 33  TSPAPNITTTTTTTTIAPPTNTTTTILTT-TTTVTTTTTSP 72


>Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 134 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 253
           GN   P ++   P  +N PK    + NG +P+DN   YV+ P
Sbjct: 47  GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86


>AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 134 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 253
           GN   P ++   P  +N PK    + NG +P+DN   YV+ P
Sbjct: 47  GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86


>AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical
           protein Y81G3A.1 protein.
          Length = 243

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 134 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 253
           GN   P ++   P  +N PK    + NG +P+DN   YV+ P
Sbjct: 47  GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86


>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
           protein R06B10.1 protein.
          Length = 1236

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +2

Query: 131 HGNGYEPIDNRPYIVNPPKDYNPNGNGY--EPIDNGAYY---VDPPQ 256
           + N Y+P++    +VNP K    + NG+  + + + A Y   VDPP+
Sbjct: 825 NANAYKPMNPIEMVVNPTKYAKKSSNGFMEKVVKDIAEYPKPVDPPK 871


>AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical
           protein F41E6.12 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 174 LILPKITTLMETATNLSTTVHITWTLPKADLTSSL 278
           LILP +TTL   +T  STT   T T P    T S+
Sbjct: 60  LILPPMTTL-PPSTTTSTTAEPTTTTPLKSSTDSV 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,449,767
Number of Sequences: 27780
Number of extensions: 210775
Number of successful extensions: 523
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)