Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a12
(313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 1.1
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 26 1.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 2.6
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 25 2.6
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 3.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 4.6
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 24 4.6
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 24 6.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 24 6.1
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 24 6.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 23 8.1
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 1.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 130 LSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSETP 252
LSGRY + + D + + ++EDVE Q I D P
Sbjct: 320 LSGRYDFRKVEDDHSTTASDQKKKLIEDVE-QLIVDNHLQP 359
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 1.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 22 IDRTTRAMSSHLINEKYHNDTKINTLNAFTDKNLXPLSGRYR 147
+++ A+SSHL K TKI+TL + T+ LS YR
Sbjct: 386 LEKRNPALSSHLQLLKETLQTKISTLISNTNATQHKLSTLYR 427
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 2.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 192 ISVCFIQLITRQTFRSISTTQ 130
+S CF L++ Q+ +SIS TQ
Sbjct: 3737 LSYCFKHLVSLQSLKSISRTQ 3757
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.0 bits (52), Expect = 2.6
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 133 SGRYRSKSLSSDKLNKTNA-DRAAILEDVEVQ-YITDKSETPGCLVGNRDMVSGQLNIKR 306
+G + +K S D++ + D + E +V+ I D++ T G L+G ++ G++N+K
Sbjct: 343 NGFHPAKYFSIDRVFRNETVDATHLAEFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKN 402
Query: 307 V 309
+
Sbjct: 403 L 403
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 3.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 91 NTLNAFTDKNLXPLSGRYRSKSLSSDKLNKTNADRAAILEDVE--VQYITDKSE 246
N +FTD ++ L D +NK N D L+ E +QY+ ++E
Sbjct: 544 NRKTSFTDSHILRLQDEVNQLRNELDLVNKRNEDLLIELQGKEEKIQYLETENE 597
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.2 bits (50), Expect = 4.6
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 28 RTTRAMSSHLINEKYHNDTKINTLNAFTDKNL-XPL-SGRYRSKSLSSDKLNKTNADRAA 201
R ++ + LIN DTK LN F KN+ P+ G+ KL+ ++A +
Sbjct: 3496 RYSKIVRQLLINTSLKKDTKEYWLNLFRSKNIYVPIFQGKLDMAITLGHKLSISSAKLST 3555
Query: 202 ILEDV 216
I V
Sbjct: 3556 ICRSV 3560
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 24.2 bits (50), Expect = 4.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 46 SSHLINEKYHNDTKINTLNAFTDKNLXPLSGRYRSKSLSSDKL 174
S+HL + Y N +I L + + N+ P+ + S L +L
Sbjct: 546 SNHLYSGSYDNSVRIWDLRSGSPINIIPMEKKVNSLRLYQGRL 588
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 23.8 bits (49), Expect = 6.1
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +2
Query: 119 IXYH*VVDIDRKVCLVIS*IKQTLIVRLYWKMSRSST*QTSLRHLAVSSE 268
I YH + D D + + I + Q+++ R W + + + V+SE
Sbjct: 713 ILYHLLGDYDTVIGVAIKNLSQSIVSRGLWSIDSKESKNMHISSNVVASE 762
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 23.8 bits (49), Expect = 6.1
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +1
Query: 55 LINEKYHNDTKINTLNAFTDKNLXPLSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYIT 234
L++E + + N+L A KN +L ++KLNK NAD + + ++
Sbjct: 731 LLSELEKSKSLNNSLAALESKN----KKLENDLNLLTEKLNKKNADTESFKNTIREAELS 786
Query: 235 DKSETPGCLVGNRDMVSGQLNIK 303
K+ +GN++ + L K
Sbjct: 787 KKALNDN--LGNKENIISDLKNK 807
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 23.8 bits (49), Expect = 6.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 266 PTRQPGVSDLSVMYWTSTSSNIAARSAFVLFNLSLDKLFDLYLPLNGXKFLSVNAF 99
P +P + V+ +I+ + F L KLFD+ +P N + LSV F
Sbjct: 607 PLSEPSLGSTGVIKLFPALLSISPADTWKPFLPHLVKLFDIAIPSNLSQSLSVLNF 662
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 23.4 bits (48), Expect = 8.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 311 STRFIFSCPLTISLFPTRQPGVSDLSVMYWTSTSSNIAARSA 186
ST F+ P+TIS + P S ++S SSN+ +A
Sbjct: 518 STSSNFTTPITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNA 559
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.128 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,632
Number of Sequences: 5004
Number of extensions: 19101
Number of successful extensions: 50
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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