Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a12
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 26 5.4
02_05_0628 - 30466535-30468001 26 5.4
01_06_0574 + 30355217-30355460,30356006-30356130,30356221-30356943 26 5.4
07_01_0663 + 4975950-4977688,4978183-4978528 26 7.2
05_03_0628 - 16367841-16369259 26 7.2
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243... 25 9.5
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587... 25 9.5
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 25 9.5
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 25 9.5
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +1
Query: 130 LSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSETPGCLV 264
+ R K S DKL KT + + ++V ++ +T C +
Sbjct: 201 IKSELRIKCSSDDKLEKTTMRKLGLKRTIDVIFVAYNDQTLPCFI 245
>02_05_0628 - 30466535-30468001
Length = 488
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 130 LSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSE 246
L GR S +S+DKL+ + D +LED++V ++ SE
Sbjct: 442 LDGRVHS-FVSADKLHTESEDIYQMLEDLKVNLVSAGSE 479
>01_06_0574 + 30355217-30355460,30356006-30356130,30356221-30356943
Length = 363
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 257 QPGVSDLSVMYWTSTSSNIAAR--SAFVLFNLSLDKLFDLYLPLNGXKFLSVNAFXVF 90
Q G S + +++ + AR SA +FN L L D L G F +NA+ +F
Sbjct: 222 QVGCSPNELARYSADGATCVARIDSAIQIFNRRLVGLVDEMNTLPGAHFTFINAYNIF 279
>07_01_0663 + 4975950-4977688,4978183-4978528
Length = 694
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 200 AARSAFVLFNLSLDKLFDLYLPLNGXKFLSVNAFXVFI 87
AA +A V F L L F +L + LS N+F VFI
Sbjct: 533 AAYAAIVWFALRLHGQFLYFLVMVYASLLSTNSFVVFI 570
>05_03_0628 - 16367841-16369259
Length = 472
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 127 PLSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSETPGCLVGNRDMVSG 288
P+SG RS+ + K N A++ ED+ ++ + K T C+ D SG
Sbjct: 374 PVSGGERSRLVMRTKGNYRLVLNASLYEDMSLKDMDKKGVTFACMNSIGDSQSG 427
>07_03_1521 +
27419859-27420106,27422050-27423363,27423885-27424308,
27424540-27424968,27425228-27425305,27426581-27426839,
27428542-27428552
Length = 920
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 43 MSSHLINEKYHNDTKINTLNAFTDKNL 123
+SS + NEK D I+T+N F ++
Sbjct: 825 LSSQISNEKLGEDVSIHTINKFLSTSM 851
>06_01_0785 -
5873244-5873357,5873458-5873562,5874333-5874424,
5874525-5874594,5875080-5875202,5875287-5875372,
5875547-5875648,5875874-5876096,5876217-5876282,
5876407-5876497,5876574-5876701,5877734-5877749,
5878171-5878318,5878440-5878511,5878586-5878690,
5879122-5879291,5880093-5880424
Length = 680
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -3
Query: 266 PTRQP-GVSDLSVMYWTS 216
PT + G+ DLSV YWTS
Sbjct: 453 PTAETRGILDLSVQYWTS 470
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 46 SSHLINEKYHNDTKINTLNAFTDKNLXPLSGRYRSKSLSSDKL 174
S LI + H+ TK+ L F KNL L G SL KL
Sbjct: 1349 SPSLICLQLHSCTKLEELEIFNCKNLCTLGGLTFLSSLKIMKL 1391
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 DTKIN-TLNAFTDKNLXPLSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSE 246
DT+ N L+A +K+ +S+ LSS LN N D ++L + +++ +T K E
Sbjct: 544 DTRSNFNLDAINEKD----DSDKKSEGLSSVGLNFVNGDALSLLLEKKLKELTSKIE 596
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.128 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,684,273
Number of Sequences: 37544
Number of extensions: 100661
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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