Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a10
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.68 
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    28   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.6  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   1.6  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   1.6  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   1.6  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    27   2.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   6.3  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   6.3  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   6.3  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    25   8.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = +3

Query: 189  SKEPANEDLTGL-SGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRPSP 365
            S  P  +  +G  S P PVP+    I   P    A   P  + +   PKP       P P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107

Query: 366  NIQQP 380
            ++  P
Sbjct: 1108 SVAVP 1112


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +3

Query: 156 ITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFT---PEAAQVAHS 326
           ++QHKTP  K  K      LT  +      SN  S  G+ N   ++F      + Q + S
Sbjct: 111 LSQHKTPEFKHRKRNVESILTPKNPSLFSSSNAASQRGSLNTAPSNFAYSHSSSLQTSAS 170

Query: 327 PKPPAHIN 350
            +PP   N
Sbjct: 171 SRPPVLSN 178


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 28/93 (30%), Positives = 37/93 (39%)
 Frame = +3

Query: 126  PPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPE 305
            P   KA GM +T    P S  +       L       PVPS   S+A  P    A  T  
Sbjct: 1457 PVQPKAPGM-VTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAP 1515

Query: 306  AAQVAHSPKPPAHINLRPSPNIQQPRK*NAAHL 404
            ++ +  S    AH+   PSP    P+  +AA L
Sbjct: 1516 SSTLPPSQSSFAHV---PSPAPPAPQHPSAAAL 1545


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 87  SSTEETSQLKAGHPPAVKAGGMRITQHK 170
           S+T  TSQLK  H   VK     +T+H+
Sbjct: 24  STTPSTSQLKHSHESNVKMSTSTVTEHR 51


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 237 PVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRPS 362
           P P  P  + G P          A QV H+ + P   N RPS
Sbjct: 422 PAPFPPFMMPGLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPS 463


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 69  NYQTIMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPS 248
           NY ++ SS +E  +LK GH   ++ G   + +H +    +S  P   D++ L+   P  S
Sbjct: 4   NYTSLKSSVDEEDELKTGHEIDLEKG--PLPEHNS--EGESTLPPYSDISKLANLVPEDS 59

Query: 249 N 251
           +
Sbjct: 60  S 60


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 26/104 (25%), Positives = 40/104 (38%)
 Frame = +3

Query: 138 KAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQV 317
           K  G    + K      SK+ AN   TG SG        +S        ++ F P    V
Sbjct: 399 KKSGDNSEKTKNSLKSSSKKSAN---TG-SGQGKTKVEYVSYNSVDKGNSSPFKPLELNV 454

Query: 318 AHSPKPPAHINLRPSPNIQQPRK*NAAHLITKRLIHNNEIENVR 449
               K  A ++  PS N+Q+    + A    +RL +   +E +R
Sbjct: 455 VGEKKANAEVDSLPSENVQESED-DKAFEENRRLRNLGSVEYIR 497


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 22/97 (22%), Positives = 38/97 (39%)
 Frame = +3

Query: 153 RITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPK 332
           + T    PH   +  PA    T ++      S+P+    AP+     F P  +  A S  
Sbjct: 280 KTTAPPPPHGSTTPLPAAASYTSMNMKQSSASHPVLQPPAPS--TLQFNPSPSPAAPS-Y 336

Query: 333 PPAHINLRPSPNIQQPRK*NAAHLITKRLIHNNEIEN 443
           PP   +++ + ++ Q    N  + +  R  H  E  N
Sbjct: 337 PPVDASVKQAADLDQAI--NFVNNVKNRFSHKPEAYN 371


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +3

Query: 84  MSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISI 263
           +SS    +         V +  +  +Q K P S  +  PA+     +S   PV     S 
Sbjct: 173 LSSLSLHTHFNPSSSSTVSSDSLESSQQKAPSSSSTATPASAASEIISNKDPVVEPTHSA 232

Query: 264 AGAPNKGN 287
           + A N G+
Sbjct: 233 SNAANSGS 240


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 180 SKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRP 359
           S  S++ A   +   S P P P+ P+ +  AP+       P A +V  +P+ PA   +  
Sbjct: 498 SSASQKAAQPSVITPSVPQP-PAAPV-VPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPE 555

Query: 360 SPNIQQ 377
           +P++ Q
Sbjct: 556 APSVPQ 561



 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 225 SGPSPVPSNPI--SIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRPSPNIQQP 380
           S P P P+ P+   +   P +      PEA  V   P+PPA   +   P++ QP
Sbjct: 633 SVPQP-PAAPVVPEVPSVPQRPAVPVVPEAPSV---PQPPAAPVVPEVPSVPQP 682


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 141 AGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEA 308
           +G  + + H + HS+ +     +D+   S  SP   +  S+ G+   G   +TP++
Sbjct: 389 SGTSQASAHPSIHSQSATFNNTQDVNRQSVSSPKVVSSSSVTGSGASGRKVYTPQS 444


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 359 WSEINVRWRLRTVGHLSCFWSEV 291
           ++E++  W+  TVG  S +W ++
Sbjct: 279 YNEVDAAWKSLTVGDKSYYWGDI 301


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 222 LSGPSPVPSNPISIAGAP 275
           L+GP   PS+P+S  G+P
Sbjct: 15  LTGPRAAPSSPVSTNGSP 32


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 201 ANEDLTGLSGPSPVPSNPISIAGAPNKGNAD 293
           AN  L+G+  P PV SNP       N   AD
Sbjct: 65  ANVSLSGVEEPVPVESNPSDQDVMSNSTEAD 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,031
Number of Sequences: 5004
Number of extensions: 43999
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)