Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28a08
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 174 4e-44
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 157 8e-39
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 153 1e-37
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777... 109 1e-24
10_08_0120 + 14972010-14973197 33 0.23
08_01_0458 + 4046809-4047099,4047269-4047321,4047332-4047722,404... 30 1.2
02_01_0383 + 2776526-2776632,2777579-2777835,2777915-2778366,277... 29 2.2
10_08_0980 - 22002818-22003008,22003646-22003750,22003859-220039... 29 2.9
03_01_0184 - 1479520-1479649,1479889-1479938,1480519-1480683,148... 29 3.8
04_04_1544 - 34273909-34274220,34274340-34274769,34274933-342750... 27 8.8
04_01_0088 - 955276-955989,956551-956736 27 8.8
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 174 bits (424), Expect = 4e-44
Identities = 74/137 (54%), Positives = 106/137 (77%)
Frame = +3
Query: 186 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSY 365
WF+E MWPG S +V++VL KS YQN+ VF +++ GKVLVLDG+IQ T++DE +Y
Sbjct: 34 WFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAY 93
Query: 366 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPF 545
QEMI+ LPLC K+P+ VL++GGGDGGV REV++H V+ I + EID V+++SK++ P
Sbjct: 94 QEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQFFPH 153
Query: 546 MAVGFDSPKLTLHVGDG 596
+AVGF+ P+++LH+GDG
Sbjct: 154 LAVGFEDPRVSLHIGDG 170
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 157 bits (380), Expect = 8e-39
Identities = 69/132 (52%), Positives = 98/132 (74%)
Frame = +3
Query: 207 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 386
MWPG S +V+ +L+ KS YQ I VF++++ G VLVLDGI+Q T+KDE +YQEM++ L
Sbjct: 75 MWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLTEKDECAYQEMVTHL 134
Query: 387 PLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFDS 566
PLC +P++VL+VGGGDGGV RE+A+H V++I + EID VI++ K + P ++VGF
Sbjct: 135 PLCSIPSPKSVLVVGGGDGGVLREIARHASVENIDICEIDQLVIDVCKDFFPQLSVGFKD 194
Query: 567 PKLTLHVGDGFD 602
P++ LHVGD D
Sbjct: 195 PRVQLHVGDAVD 206
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 153 bits (371), Expect = 1e-37
Identities = 67/132 (50%), Positives = 96/132 (72%)
Frame = +3
Query: 207 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 386
MWPG S +V+++L+ KS YQ + VF++++ GKVLVLDGI+Q T KDE +YQEMI+ L
Sbjct: 86 MWPGEAHSLKVEKILYQGKSPYQEVLVFESSTYGKVLVLDGIVQLTDKDECAYQEMITHL 145
Query: 387 PLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFDS 566
PLC +P+ VL++GGGDGGV RE+ +H V+ I + EID VI++ K + P ++VGF
Sbjct: 146 PLCSIPSPKKVLVIGGGDGGVLREICRHGSVESIDICEIDQLVIDVCKDFFPDLSVGFKD 205
Query: 567 PKLTLHVGDGFD 602
P++ LHVGD +
Sbjct: 206 PRVRLHVGDAVE 217
>02_02_0206 -
7771835-7771913,7772083-7772219,7772364-7772422,
7772535-7772610,7772717-7772873,7773241-7773329,
7773648-7773750,7773919-7774013,7774301-7774367,
7774894-7775066
Length = 344
Score = 109 bits (263), Expect = 1e-24
Identities = 55/146 (37%), Positives = 80/146 (54%)
Frame = +3
Query: 156 KKKMDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGII 335
K++ + ++ W+ E D + + VLH SKYQ I + DT GK L++DG +
Sbjct: 31 KQQQREEESKWYEEEID--DDLKLCYALNSVLHRGASKYQEIALIDTKHFGKALIIDGKM 88
Query: 336 QCTQKDEFSYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRV 515
Q T+ DEF Y E + PL H NP+ V I+GGG+G AREV +H V +V+ +ID V
Sbjct: 89 QSTEVDEFIYHESLIHPPLLFHPNPKTVFIMGGGEGSAAREVLRHNTVHRVVMCDIDQEV 148
Query: 516 IELSKRYLPFMAVGFDSPKLTLHVGD 593
++ + YL F S KL L + D
Sbjct: 149 VDFCRTYLTVNWDAFASDKLCLIIND 174
>10_08_0120 + 14972010-14973197
Length = 395
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +2
Query: 203 RYVAWGYFLIRSQRSTAHRKIKIPEYPSF*YNQFG---EGSCLGRNHTMHSER*VFLSGN 373
RY FL+ + TAHR + P F FG EG+ + + H E VF +
Sbjct: 196 RYATDVEFLVGGETFTAHRLVLAARSPVFMVELFGPMKEGTTVNKIHIFDMEAQVFRALL 255
Query: 374 DIIFAFMLPQKSRK 415
I+ MLP+ ++
Sbjct: 256 KFIYTDMLPEMDQE 269
>08_01_0458 +
4046809-4047099,4047269-4047321,4047332-4047722,
4047998-4048291
Length = 342
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 405 NPENVLIVGGGDGGVAREVAK-HPQVKHIVL 494
N +++ VGGGDG +AR + K P +K +VL
Sbjct: 180 NVSSLVDVGGGDGSMARAIVKAFPHIKCLVL 210
>02_01_0383 +
2776526-2776632,2777579-2777835,2777915-2778366,
2778845-2779102
Length = 357
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 402 KNPENVLIVGGGDGGV--AREVAKHPQVKHIVLVEIDDRVIE 521
++ E+VLI+GGG GV A E+A K + LV R++E
Sbjct: 127 ESSESVLIIGGGPTGVELAGEIAVDYPEKKVTLVHRGSRLLE 168
>10_08_0980 -
22002818-22003008,22003646-22003750,22003859-22003987,
22004076-22004268,22004270-22004473,22004931-22005071,
22005325-22005486,22005664-22005666
Length = 375
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 240 KEVLHTEKSKYQNIQVFDTTSLGKVLVLDGII 335
K+ LH S Y+N +V D +S G +V+DG++
Sbjct: 300 KKHLHGAFSTYKNYEVLDVSSNGGDVVVDGMV 331
>03_01_0184 -
1479520-1479649,1479889-1479938,1480519-1480683,
1481287-1481339,1481805-1481934,1482189-1482266,
1482583-1482642,1483428-1483480,1483574-1483895
Length = 346
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 360 SYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRY 536
SY + LP + P V ++G G G A + K +V EID ++IELS+ Y
Sbjct: 123 SYWDEFVSLPAVVPRGP--VALLGLGAGTAAHLMLKFYPWLQLVGWEIDPKIIELSRDY 179
>04_04_1544 -
34273909-34274220,34274340-34274769,34274933-34275030,
34275178-34275280,34275386-34275471,34275590-34275677,
34275773-34275886,34275975-34276179,34276530-34276557
Length = 487
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 405 NPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRV 515
+P +V+++GGG GVA A + ++E DRV
Sbjct: 22 SPPSVIVIGGGISGVAAARALSNASFEVTVLESRDRV 58
>04_01_0088 - 955276-955989,956551-956736
Length = 299
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 426 VGGGDGGVAREVAKHPQVKHIVLVEIDD 509
VG GDGG A QV+ + VEIDD
Sbjct: 140 VGDGDGGEAAAKVIDLQVEDLKFVEIDD 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,103,725
Number of Sequences: 37544
Number of extensions: 330233
Number of successful extensions: 841
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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