Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a08
         (609 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            30   0.067
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.4  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   4.4  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   4.4  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    23   7.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   7.7  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 29.9 bits (64), Expect = 0.067
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 408 PENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFDSPKLT 578
           P N L+ GGG G V ++     Q   I+  ++   V+ L+    P    G+D   LT
Sbjct: 468 PNNNLLTGGGPGTVPQKPPSSVQDLRILQKKVHGSVVNLAPNDGPPHGAGYDGRDLT 524


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 547 WRSVSIVLS*LFMWVTVL 600
           W+ V++VL  LF+W+  L
Sbjct: 497 WKYVAMVLDRLFLWIFTL 514


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 547 WRSVSIVLS*LFMWVTVL 600
           W+ V++VL  LF+W+  L
Sbjct: 497 WKYVAMVLDRLFLWIFTL 514


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 529 KGTSRSWRSVSIVLS*LFMWV 591
           +     W+ V++VL  LF+W+
Sbjct: 489 ESVKEDWKYVALVLDRLFLWI 509


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 366  DKKTHLSECIV*FRPRQEPSPNWLYQKL 283
            D+K H    +V ++  Q  +PNW  + L
Sbjct: 2068 DEKKHAQHVLVDYKSHQILNPNWYVRDL 2095


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 547 WRSVSIVLS*LFMWV 591
           W+ VS+VL   F+WV
Sbjct: 454 WKFVSMVLDRFFLWV 468


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 547 WRSVSIVLS*LFMWV 591
           W+ V++VL  LF+W+
Sbjct: 649 WKYVAMVLDRLFLWI 663


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,551
Number of Sequences: 2352
Number of extensions: 12106
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)