Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a02
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.009
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   0.45 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   2.4  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   3.2  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   7.3  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   7.3  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   7.3  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.009
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 206 LILTAATCWLFWLCAYMAQMNPLIGP 283
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 87  SKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQ 182
           S+W  P+++       GVW ++ AP SHL+D+
Sbjct: 47  SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 125 SILWGVVGIICPIFAPKGPNRGIIQV 202
           ++LWG++ +I  +F P+ P R +IQV
Sbjct: 189 NLLWGIITMIGILFLPESP-RYLIQV 213


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 78  NNISKWAT--PLSRSSFSPSFGVWLVLFAPSSHLKDQTEGL 194
           +N+ K A   PLS+ S SPS+  + V     S L+  ++GL
Sbjct: 41  DNVDKPANSIPLSKRSTSPSYAPYTVACPSGSLLRPASDGL 81


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 66  KKYLNNISKWATPLSRSSFSPSFGVW 143
           KK LNN++         +F PSF VW
Sbjct: 352 KKILNNLALMKKKELNLNFLPSFDVW 377


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 99  TPLSRSSFSPSFGVWLVLFAPSSHLKD 179
           +P S  S  P+FGVWL+  +  +   D
Sbjct: 430 SPHSVKSNEPAFGVWLIFDSVDNRASD 456


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 125 SILWGVVGIICPIFAPKGP 181
           ++LWG++ ++  IF P+ P
Sbjct: 155 NLLWGIITLVGIIFLPESP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,068
Number of Sequences: 5004
Number of extensions: 40199
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)