Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a02
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0830 + 25159758-25162460                                         29   2.4  
05_01_0080 - 535443-535481,535569-535698,536483-536586,536686-53...    28   3.1  
01_01_0318 - 2572049-2572179,2572280-2572405,2572958-2573201           28   3.1  
12_02_0143 - 14354323-14354463,14354733-14354837,14355515-143558...    27   9.6  

>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 193 NPSVWSFRCEDGANNTNHTPKDGENEDRDKGVAHFEM 83
           NPSV S  C +G  N   T +   N D   G A   +
Sbjct: 235 NPSVPSLACRNGLENVPVTEESSANNDAKSGAAQVSL 271


>05_01_0080 -
           535443-535481,535569-535698,536483-536586,536686-536903,
           537755-537762,538146-538183,538475-538668,539168-539296,
           539392-539481,539726-539839,540008-540154,540228-540293,
           540876-540987
          Length = 462

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 140 VVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAYMAQMN 268
           V+G+ C +     P  G I + L +T +T  ++W  AY+ +++
Sbjct: 385 VLGLACGLLWGAVPLVGAIWIALFVTISTGLVYWYYAYLLKID 427


>01_01_0318 - 2572049-2572179,2572280-2572405,2572958-2573201
          Length = 166

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 141 TPQRMEKTKIGIRE*PILRCYL-DISSNFDYLKQTSAAPRW 22
           TPQ+++ +K+GI+   +   YL D++   + L Q +   RW
Sbjct: 106 TPQKVQTSKVGIKNKKVQAQYLSDLAKEAERLSQENENLRW 146


>12_02_0143 -
           14354323-14354463,14354733-14354837,14355515-14355815,
           14356065-14356261,14356412-14356940,14357842-14358848
          Length = 759

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 268 PSHRAQTQQ*NPNLD--FTHLGK-QNKQHASL 354
           P HRAQTQ+   N+D  F ++ K   +QH  L
Sbjct: 722 PEHRAQTQEWQQNIDARFANINKMMQQQHDDL 753


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,519
Number of Sequences: 37544
Number of extensions: 260007
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)