Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28a02
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical p...   100   6e-22
Z81071-8|CAB03016.1|  317|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z92826-7|CAD90171.2|   99|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z35639-2|CAA84694.1|  351|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical
           protein F49C12.13 protein.
          Length = 86

 Score =  100 bits (239), Expect = 6e-22
 Identities = 41/83 (49%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
 Frame = +2

Query: 104 LIPIFVFSILWGVVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAYMAQMNPLIGP 283
           LIP+   S  W ++G   P   PKGPNRGIIQ+++I+TA  CW+FW+  ++ Q+NPLIGP
Sbjct: 4   LIPLVSVSAFWAIIGFGGPWIVPKGPNRGIIQLMIIMTAVCCWMFWIMVFLHQLNPLIGP 63

Query: 284 RLSNETLIWISRTWG---NKINN 343
           +++ +T+ WIS  WG   N INN
Sbjct: 64  QINVKTIRWISEKWGDAPNVINN 86


>Z81071-8|CAB03016.1|  317|Caenorhabditis elegans Hypothetical
           protein F28F8.6 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 151 NTNHTPKDGENEDRDKGVAHFEMLFRYFF*FRLSQTNISCPKMVDSVGN 5
           N N TP   EN + + G    ++L +    F L  TNI  P MVD   N
Sbjct: 56  NANPTPGRSENMN-ESGYFSIQVLEKALETFSLKLTNIENPAMVDYKNN 103


>Z92826-7|CAD90171.2|   99|Caenorhabditis elegans Hypothetical
           protein C18D11.6 protein.
          Length = 99

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 335 FCFPKCVKSRLGFHC*VWAR*EGSSVP 255
           FC P  +K ++G H   W + E S  P
Sbjct: 23  FCAPATLKEKVGDHALTWTKVEASQTP 49


>Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical
           protein M05B5.2 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 194 IQVVLILTAATCWLFWLCAYMAQM 265
           I ++L+L A +CW  W C    Q+
Sbjct: 99  IVLLLVLIAMSCWCCWCCPLYKQL 122


>Z35639-2|CAA84694.1|  351|Caenorhabditis elegans Hypothetical
           protein D2045.5 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 69  KYLNNISKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQTEGLFKW 203
           K   NI K+   L   S    FG+W   FA    ++    G F+W
Sbjct: 254 KEFANIHKYLETLEYKSRPDYFGLWSECFAGFKRVRGSFFGRFEW 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,987
Number of Sequences: 27780
Number of extensions: 226185
Number of successful extensions: 451
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)