Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27p23
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 71 2e-13
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 27 2.2
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 2.9
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 27 2.9
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 27 2.9
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 25 6.6
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 25 6.6
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 25 6.6
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 6.6
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 6.6
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 8.8
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 8.8
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/74 (45%), Positives = 47/74 (63%)
Frame = +1
Query: 310 NASTQQKSPNIVLIIADDLGWDDVSFHGSDQILTPNIDLLAYSGKALGRYYTHCICTPSR 489
N + K PN ++I+ADDLGW DVS GS +I TPNI+ LA G L ++T C+P+R
Sbjct: 4 NKQAESKKPNFLVIVADDLGWSDVSPFGS-EIHTPNIERLAKEGVRLTNFHTASACSPTR 62
Query: 490 AALLTGKYAHRIGM 531
+ LL+G H G+
Sbjct: 63 SMLLSGTDNHIAGL 76
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 590 NIFSVVGKPLSSLFVKGYPCIPIRCAYF 507
++F + GKP ++ F +GY P+ A+F
Sbjct: 501 SLFPIGGKPNANDFFQGYLAAPVTLAFF 528
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 295 VSRIEWCYTFRTTATYIYFYFPNK 224
VS I +C+T T +Y+Y+ N+
Sbjct: 849 VSSISFCFTHAVTEKVLYYYYGNE 872
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 575 VGKPLSSLFVKGYPCIPI 522
V KP S LF++ PCIP+
Sbjct: 117 VRKPASFLFIQNPPCIPV 134
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 517 VHIFRSRELPSMVYKYSEYSSVPRPFQSMPKDRCSESIFGLI 392
VHIFR +E+ S + + S P P +S+ + R S S+ G +
Sbjct: 257 VHIFRLKEVYSNLERQGLLPSSPPPKESLLR-RSSRSLIGTV 297
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 530 CRDTP*RIVKTEVCRRRKKY 589
C D P R+V+TE R R K+
Sbjct: 997 CLDDPKRVVRTEASRTRHKW 1016
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 244 YFYFPNKSYDQITTYKIEILQKKSRSLNTLFSPFHFTF 131
YF PN SY + TY L SL L+SP T+
Sbjct: 75 YFLKPNVSYSDLATYS---LAAYPYSLKVLWSPIVDTY 109
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 10 CWLLLWSHVIY--IYRATFYYFFLNITGF 90
CW+ LWS + + I A YF +IT F
Sbjct: 125 CWICLWSMIFHFIIAIANGVYFVKHITKF 153
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 391 GSDQILTPNIDLLAYSGKALGRYYTHCI 474
G D N++ + YSGK L +Y C+
Sbjct: 400 GEDFSANSNLNSMYYSGKVLAKYAMLCV 427
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 393 SMKTYVVPSQIIGNDKNYIRRFLLSRSVNYPI 298
++ T P+ +GND+ Y +R L+ +P+
Sbjct: 495 AIPTEQAPTDFLGNDQAYAQRLFLASIKRWPV 526
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 304 SNSVSRIEWCYTFRTTATYIYFYFPNK--SYDQITTYKIEILQKKSRSLNTLFSPF 143
S+ + E C+T R TAT+ Y F + S+ + ++++S++ + LF+ F
Sbjct: 412 SSHATNTEQCFTKRLTATFGYSLFSSSFLSHTKNPDVASFYVKERSKAHHFLFNTF 467
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 572 GKPLSSLFVKGYPCIPIR 519
GKPL++L +K Y IP+R
Sbjct: 604 GKPLANLMIKLYGFIPMR 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,861
Number of Sequences: 5004
Number of extensions: 54947
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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