Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p17
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    83   3e-17
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.5  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.4  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   7.7  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.7  

>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
 Frame = +3

Query: 171 GKSLKLD--TAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARF 344
           GKSLKLD  T +D + +   + +  +++ + L+GNT+G  AA  +S+ + S  +L+IA F
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67

Query: 345 SDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLL 500
           SD+FTGR+K EIP AL  L   ++    +L  + LSDNAFGP   E L   L
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFL 118



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 432 LAVLDLSDNAFGPIGVEGLAKLLQS 506
           L VLDL DN F  +G   LA  L+S
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKS 242


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
 Frame = -3

Query: 445 SSTAKRAPAAIMPSPKALKAGGISVFILPVNMSENLAILSSGCDSKALEIAWAAVTPSVL 266
           SST   +P+A + S  A     +S      + S N  IL++  +S A+  +    + S+ 
Sbjct: 164 SSTPVFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVSSSETLTSVSIT 223

Query: 265 PVNARYWRFGHLLIASTICCASFAVSNFR-------DFPEKSTPVSGCAGSSSTVFNEFK 107
              + Y      + AST   ++  VS          D P   + +S  A SSS+   E  
Sbjct: 224 STESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETS 283

Query: 106 S 104
           S
Sbjct: 284 S 284


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 511 TSLCSSLARPSTPIGPNALSLRSSTAKRAPAAIMPSPKALKAGGISVFILPVNMSENLAI 332
           +S  SS + P+T   P++ S  S T+     +   S   L    +S  ILP + S  ++I
Sbjct: 100 SSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSI 159

Query: 331 LSSGCDS 311
            SS   S
Sbjct: 160 SSSSLSS 166


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 664 SAVAPSFSKRFLPAMKTRSL-RFLLESARANNLPPVMPRPL 545
           SA AP   K  +PA+   +  R   ESA A+NLPP    PL
Sbjct: 130 SAEAPISVKSSIPAIPRVTFERLCYESAIASNLPPNALSPL 170


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 160 TPVSGCAGSSSTVFNEFKSKVAILQF 83
           TP+S C G+ S +FN  +   A+L F
Sbjct: 213 TPMSACGGTISDLFNPIQRTGALLVF 238


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 159  VDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESH-PELKI 335
            +D S  +L+    + A++   ++ K P L+YL L+GNT    + H  +   +S+   LK 
Sbjct: 905  LDISTNNLQNLAVEKAEK--KSLTKLPQLEYLNLSGNTWFRFSEHEDTNFTKSYLKNLKF 962

Query: 336  ARFSDMFT 359
                D+ T
Sbjct: 963  LSIMDLNT 970


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +3

Query: 93  MATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQQIVDAINKCPN 242
           M  F   S+   LD  A P+TG+D    +   D     Q ++D   K  N
Sbjct: 99  MEAFRNESIYVFLDL-ANPKTGIDRDTPTWNTDQFSSYQSVIDTFQKYNN 147


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 270 YCRSTQDIGGSGIY*SRLQFVVHLSRYPILEIFQ 169
           Y R  +D GG   + SRL   V L+R+ + +  Q
Sbjct: 527 YLRKARDFGGDNEFESRLIIRVQLARHVVRKCLQ 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,393
Number of Sequences: 5004
Number of extensions: 55644
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)