Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p17
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.3  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 334  ILSSGCDSKALEIAWAAVTPSVLPVNARYWRFGHLLI 224
            I SSG DS +   +W A T S      R  ++G L++
Sbjct: 1066 ITSSGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLVM 1102


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 220 STICCASFAVSN--FRDFPEKSTPVSGCAGSSSTVFNEFKSK 101
           S  CC      N   R+F E     + C GS+ T +++  ++
Sbjct: 352 SDSCCLCLDSMNAVIRNFNESENRRNSCLGSTETYYSKHNTQ 393


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 330  KIARFSDMFTGRMKTEIPPALSALG 404
            KIA F D FT   K ++     A+G
Sbjct: 1278 KIASFDDKFTATYKEDVKLPCLAVG 1302


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 306 PWRSHGRPSHPVYC 265
           PWR+ G P +  YC
Sbjct: 135 PWRTCGNPWNTRYC 148


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 306 PWRSHGRPSHPVYC 265
           PWR+ G P +  YC
Sbjct: 188 PWRTCGNPWNTRYC 201


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 521 PRGASSEQQRP 553
           PRG+S+E+Q+P
Sbjct: 8   PRGSSAEEQQP 18


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 521 PRGASSEQQRP 553
           PRG+S+E+Q+P
Sbjct: 8   PRGSSAEEQQP 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,648
Number of Sequences: 438
Number of extensions: 3603
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)