Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p14
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    97   2e-21
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    26   4.4  

>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
 Frame = +3

Query: 186 QNDDRPKT--YLPDQPLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFP 359
           QND +P    +LP   +  DE+LV D S Y MLH  Q   P LSFDI+ D+LG +R  +P
Sbjct: 65  QNDAQPSKIPWLPGGKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWP 124

Query: 360 MTAYLVAGTQASSAHLNNLLVIKMSNLHPISKPXXXXXXXXXXXXXXXXXQKPQMTFSFI 539
              YLV G+QA  ++ N L V+K+S L+                      + P +    I
Sbjct: 125 HQMYLVGGSQALDSNDNELTVMKLSQLYKTQ-----HDENDDASDNSDVEEDPILEHKSI 179

Query: 540 KHQGCVNRIRA----TNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVVL 680
             +G  NR+R+     N     L AS+ E G+V IW+I   L+++D P V+
Sbjct: 180 STKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVM 230


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 531 SFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVV 677
           S+I  +    R+R++  ++  +  S SE G+V +W++  + Q     VV
Sbjct: 217 SYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDLENETQITSTSVV 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,091
Number of Sequences: 5004
Number of extensions: 43591
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)