Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p14
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156...    77   2e-14
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161...    76   2e-14
06_03_1175 + 28168007-28170058                                         29   4.5  
03_02_0435 - 8406262-8406419,8406499-8406547,8406577-8407458,840...    29   4.5  
06_03_1258 + 28796643-28798169                                         28   7.9  

>12_01_0207 -
           1559491-1559544,1559806-1560161,1560244-1560363,
           1561523-1561568,1561741-1561858,1561981-1562093,
           1562586-1562658,1562743-1562882,1563005-1563075,
           1563228-1563396,1563594-1563659,1564052-1564150,
           1564271-1564444,1564720-1564798,1564901-1565007,
           1565391-1565435
          Length = 609

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 51/147 (34%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
 Frame = +3

Query: 228 LKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHL 407
           L+E E+L  D  AY  L     G PCLSFD+V D LG  R+EFP T Y VAGTQA  A  
Sbjct: 24  LEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERASW 83

Query: 408 NNLLVIKMSNLH-----PISKPXXXXXXXXXXXXXXXXXQK-------PQMTFSFIKHQG 551
           N + + K+ N++     PI                     +       P +    + H G
Sbjct: 84  NYIGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAANEDTMPILHLKKVAHAG 143

Query: 552 CVNRIRATNFKNSVLAASWSELGRVDI 632
           CVNRIR+ N +   + A+W + G V +
Sbjct: 144 CVNRIRSMN-QEPHICATWGDTGHVQV 169


>11_01_0204 -
           1612505-1612636,1612809-1612926,1613050-1613162,
           1613640-1613712,1613797-1613936,1614059-1614129,
           1614262-1614430,1614625-1614690,1615081-1615179,
           1615298-1615471,1615745-1615823,1615929-1616035,
           1616395-1616439
          Length = 461

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 51/147 (34%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
 Frame = +3

Query: 228 LKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHL 407
           L+E E+L  D  AY  L     G PCLSFD+V D LG  R+EFP T Y VAGTQA  A  
Sbjct: 24  LEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERATW 83

Query: 408 NNLLVIKMSNLH-----PISKPXXXXXXXXXXXXXXXXXQK-------PQMTFSFIKHQG 551
           N + + K+ N++     PI                     +       P +    + H G
Sbjct: 84  NYIGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAVNEDTMPILHLKKVAHAG 143

Query: 552 CVNRIRATNFKNSVLAASWSELGRVDI 632
           CVNRIR+ N +   + A+W + G V +
Sbjct: 144 CVNRIRSMN-QEPHICATWGDTGHVQV 169


>06_03_1175 + 28168007-28170058
          Length = 683

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 576 NFKNSVLAASWSELGRVDIWNIT 644
           N+   V   +WS +GR+D WN+T
Sbjct: 243 NYMVQVTIDNWSPIGRLDNWNLT 265


>03_02_0435 -
           8406262-8406419,8406499-8406547,8406577-8407458,
           8408976-8409127,8410346-8410616
          Length = 503

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 285 AQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKM 431
           A+    CL     T+N  N  N  P + YL+     S A+L++  ++ M
Sbjct: 387 AEKAVACLRHSRRTENTVNPTNSNPESGYLLPSASVSLANLSDKKILSM 435


>06_03_1258 + 28796643-28798169
          Length = 508

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 521 DDILIHKTSRMCKQNKGYKF*KLCIGSKLVRTRPS*HL-EYHTTAAS 658
           D I++H+T      N+ Y+  +L +G++ + T P+ HL + H  AA+
Sbjct: 54  DAIIVHETDANGVPNELYEAAQLYLGARCLATAPAMHLHKAHGAAAA 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,587
Number of Sequences: 37544
Number of extensions: 264573
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)