Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27p14
(680 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF011614-1|ABK41104.1| 446|Homo sapiens CDW4/GRWD1 protein. 140 4e-33
BC002440-1|AAH02440.1| 446|Homo sapiens glutamate-rich WD repea... 140 4e-33
AF337808-1|AAK17998.1| 446|Homo sapiens glutamate rich WD repea... 140 4e-33
AB075822-1|BAB85528.1| 445|Homo sapiens KIAA1942 protein protein. 140 4e-33
AK074676-1|BAC11130.1| 446|Homo sapiens protein ( Homo sapiens ... 138 1e-32
>EF011614-1|ABK41104.1| 446|Homo sapiens CDW4/GRWD1 protein.
Length = 446
Score = 140 bits (339), Expect = 4e-33
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Frame = +3
Query: 204 KTYLPDQ--PLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLV 377
+ YLP + PL+E E+LV D AYV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL
Sbjct: 31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLC 90
Query: 378 AGTQASSAHLNNLLVIKMSNLHPISKPXXXXXXXXXXXXXXXXXQ--KPQMTFSFIKHQG 551
AGTQA SA N L++++M NLH P + KPQ+ + + H G
Sbjct: 91 AGTQAESAQSNRLMMLRMHNLHGTKPPPSEGSDEEEEEEDEEDEEERKPQLELAMVPHYG 150
Query: 552 CVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVVL 680
+NR+R + +A WSE G+V+++ + + LQ V++P L
Sbjct: 151 GINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQAL 193
>BC002440-1|AAH02440.1| 446|Homo sapiens glutamate-rich WD repeat
containing 1 protein.
Length = 446
Score = 140 bits (339), Expect = 4e-33
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Frame = +3
Query: 204 KTYLPDQ--PLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLV 377
+ YLP + PL+E E+LV D AYV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL
Sbjct: 31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLC 90
Query: 378 AGTQASSAHLNNLLVIKMSNLHPISKPXXXXXXXXXXXXXXXXXQ--KPQMTFSFIKHQG 551
AGTQA SA N L++++M NLH P + KPQ+ + + H G
Sbjct: 91 AGTQAESAQSNRLMMLRMHNLHGTKPPPSEGSDEEEEEEDEEDEEERKPQLELAMVPHYG 150
Query: 552 CVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVVL 680
+NR+R + +A WSE G+V+++ + + LQ V++P L
Sbjct: 151 GINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQAL 193
>AF337808-1|AAK17998.1| 446|Homo sapiens glutamate rich WD repeat
protein protein.
Length = 446
Score = 140 bits (339), Expect = 4e-33
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Frame = +3
Query: 204 KTYLPDQ--PLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLV 377
+ YLP + PL+E E+LV D AYV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL
Sbjct: 31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLC 90
Query: 378 AGTQASSAHLNNLLVIKMSNLHPISKPXXXXXXXXXXXXXXXXXQ--KPQMTFSFIKHQG 551
AGTQA SA N L++++M NLH P + KPQ+ + + H G
Sbjct: 91 AGTQAESAQSNRLMMLRMHNLHGTKPPPSEGSDEEEEEEDEEDEEERKPQLELAMVPHYG 150
Query: 552 CVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVVL 680
+NR+R + +A WSE G+V+++ + + LQ V++P L
Sbjct: 151 GINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQAL 193
>AB075822-1|BAB85528.1| 445|Homo sapiens KIAA1942 protein protein.
Length = 445
Score = 140 bits (339), Expect = 4e-33
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Frame = +3
Query: 204 KTYLPDQ--PLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLV 377
+ YLP + PL+E E+LV D AYV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL
Sbjct: 30 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLC 89
Query: 378 AGTQASSAHLNNLLVIKMSNLHPISKPXXXXXXXXXXXXXXXXXQ--KPQMTFSFIKHQG 551
AGTQA SA N L++++M NLH P + KPQ+ + + H G
Sbjct: 90 AGTQAESAQSNRLMMLRMHNLHGTKPPPSEGSDEEEEEEDEEDEEERKPQLELAMVPHYG 149
Query: 552 CVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVVL 680
+NR+R + +A WSE G+V+++ + + LQ V++P L
Sbjct: 150 GINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQAL 192
>AK074676-1|BAC11130.1| 446|Homo sapiens protein ( Homo sapiens
cDNA FLJ90195 fis, clone MAMMA1001310. ).
Length = 446
Score = 138 bits (335), Expect = 1e-32
Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
Frame = +3
Query: 204 KTYLPDQ--PLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLV 377
+ YLP + PL+E E+LV D AYV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL
Sbjct: 31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLC 90
Query: 378 AGTQASSAHLNNLLVIKMSNLHPISKPXXXXXXXXXXXXXXXXXQ--KPQMTFSFIKHQG 551
AGTQA SA N L+++ M NLH P + KPQ+ + + H G
Sbjct: 91 AGTQAESAQSNRLMMLLMHNLHGTKPPPSEGSDEEEEEEDEEDEEERKPQLELAMVPHYG 150
Query: 552 CVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVVL 680
+NR+R + +A WSE G+V+++ + + LQ V++P L
Sbjct: 151 GINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQAL 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,593,273
Number of Sequences: 237096
Number of extensions: 1453442
Number of successful extensions: 2375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2370
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -