Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p14
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...   106   2e-23
AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical...    32   0.44 
AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical...    32   0.44 
Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score =  106 bits (254), Expect = 2e-23
 Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
 Frame = +3

Query: 192 DDRPKTYLP--DQPLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMT 365
           +++ + Y+P   +PLK+ E+L  D SAY + H   +  PCLSFD+V D LG +R +FP  
Sbjct: 37  ENQRQAYIPGLSRPLKKGEELDFDPSAYKLFHSFNSDWPCLSFDVVKDGLGENRTQFPAE 96

Query: 366 AYLVAGTQASSAHLNNLLVIKMSNLHPISKPXXXXXXXXXXXXXXXXXQ--------KPQ 521
            Y+V+GTQA     N ++V+ + NL  + K                  +        +P+
Sbjct: 97  CYIVSGTQADKPRDNEIIVMGLKNLTTMRKEKENKGDDSDTSEDESEDEDAEEEKKREPK 156

Query: 522 MTFSFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITQQL 653
           M    I H G +NRIR+    +S + A WS+ GRV +WNIT  L
Sbjct: 157 MHAVSIPHYGGINRIRSDRLGDSTVCACWSDQGRVQVWNITDAL 200


>AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1b protein.
          Length = 487

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 513 KPQMTFSFIK----HQGCVNRIRATNFKNSVLAASWSELGRVDIWNITQQ 650
           KPQ+T  F+     H   +N+++ +  K   L AS    GR+ IW ++ Q
Sbjct: 60  KPQLTVGFLANLVFHNHAINQVKFSPSKEHELLASGDCEGRITIWKLSDQ 109


>AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1a protein.
          Length = 489

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 513 KPQMTFSFIK----HQGCVNRIRATNFKNSVLAASWSELGRVDIWNITQQ 650
           KPQ+T  F+     H   +N+++ +  K   L AS    GR+ IW ++ Q
Sbjct: 62  KPQLTVGFLANLVFHNHAINQVKFSPSKEHELLASGDCEGRITIWKLSDQ 111


>Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical
           protein F10B5.5 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 300 PCLSFDIVTDNLGNDRN-EFPMTAYLVAGTQASSAHLNNLLV 422
           PC+ FD + +NL  D N +  + +Y+ A  + S  H+N  ++
Sbjct: 128 PCVEFDSIWENLIYDSNLKNEVMSYVAALARLSEKHVNTKII 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,916
Number of Sequences: 27780
Number of extensions: 246046
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)