Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p09
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    34   0.016
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    34   0.016
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    29   0.45 
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    29   0.78 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.2  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +1

Query: 115 TDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRS 246
           T+   RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +1

Query: 115 TDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRS 246
           T+   RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
           K  + PKR MSA++ +       +K DNP     ++    G+ W+ +
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = +1

Query: 124 PKRPMSAYLLWLNXAXSXIKDD--NPGLKVTEIAKKAGEIWRSMY--DKSEWXXXXXXXX 291
           PKRP SAY L+     S IK+        V E+ K   E W S+   D+  +        
Sbjct: 117 PKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLR 176

Query: 292 XQYXVHLXSFNAN 330
             Y   + ++NA+
Sbjct: 177 EAYEEEMAAYNAS 189


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 529  ILDHEMNVFFLSGFCYLDLNXTLFCSITHNK 621
            IL  ++      GFCYL L   +F SI+ N+
Sbjct: 1063 ILSIKIEKSLYKGFCYLYLTLKVFLSISSNR 1093


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,322
Number of Sequences: 5004
Number of extensions: 28218
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)