Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27p09
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 44 1e-04
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 41 8e-04
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 38 0.009
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 37 0.016
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 35 0.050
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 34 0.11
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 33 0.15
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 31 1.1
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 29 3.3
07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848... 28 5.7
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
K + PKR M+ ++ + +K++NP L TEIAKK GE+W+ M
Sbjct: 594 KDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
K + PKR ++ ++ + + +K+ NP L TEIAKK GE W+ M
Sbjct: 553 KDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLK-VTEIAKKAGEIWRSMYD 255
K + PKRP SA+ +++ K+ +P +K V+ I K G+ W+SM D
Sbjct: 30 KDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 127 KRPMSAYLLWLNXAXSXIKDDNPGLK-VTEIAKKAGEIWRSMYDKSE 264
KRP +A+ L+++ K ++P K V+ +AK+ GE W+SM D+ +
Sbjct: 93 KRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDK 139
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 35.1 bits (77), Expect = 0.050
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLK-VTEIAKKAGEIWRSM 249
PK+P +A+ ++ K++NP +K + E+ K GE W +M
Sbjct: 49 PKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLK-VTEIAKKAGEIWRSMYDKSE 264
PKRP SA+ ++++ + +P K V ++K AGE WR+M ++ +
Sbjct: 33 PKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEK 80
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 127 KRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
K+P AY+LW + IK ++P E++ G W+++
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWXXXXXXXXXQ 297
PK+P S++LL+ A + ++ PG+ + + W+ + +K W
Sbjct: 414 PKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAA 473
Query: 298 YXVHLXSFN---ANGGG 339
Y + + A+GGG
Sbjct: 474 YKRDMEEYTKAAASGGG 490
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWXXXXXXXXXQ 297
PK+PMSAY ++ + + + V EI + GE W++M +K+ + +
Sbjct: 285 PKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSEAEKAPFEAAARKQREE 342
Query: 298 YXVHLXSF 321
Y V + ++
Sbjct: 343 YQVEMAAY 350
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLK-VTEIAKKAGEIWRSMYDKSE 264
PKR ++ + +L + +P K V + K AGE WR+M D+ +
Sbjct: 25 PKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEK 72
>05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 209 RR*PKKQAKSGGPCMTKANGKKRRQKPKNNTLYIXNHLMQMAAVPXRXXRK 361
R+ P K KSG +A KKR+ K NT +H ++ + R +K
Sbjct: 883 RKIPSKPQKSGEEEKKEATSKKRKPNKKENTEISKSHQDEVQQLSKRVKKK 933
>07_01_1179 +
11184521-11184536,11184593-11184691,11184790-11184852,
11185011-11185084,11185187-11185261,11185371-11185514,
11185629-11185733,11185839-11186276,11187102-11188241,
11188320-11188493
Length = 775
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 209 RR*PKKQAKSGGPCMTKANGKKRRQKPKNNTLYIXNHLMQMAAVPXRXXRK 361
R+ P K KSG +A KKR+ K NT +H ++ + R +K
Sbjct: 710 RKIPSKPQKSGEEEKKEATSKKRKPNKKENTEIGKSHQDEVQQLSKRVKKK 760
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,481,617
Number of Sequences: 37544
Number of extensions: 156543
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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