Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27p09
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 56 2e-08
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 50 2e-06
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 50 2e-06
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 46 2e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 41 9e-04
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 41 9e-04
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 40 0.002
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 36 0.033
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 32 0.41
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 32 0.41
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 32 0.41
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 32 0.41
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 31 0.72
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 31 0.72
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 31 0.72
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 31 0.72
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 31 0.72
Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H... 27 8.9
AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H... 27 8.9
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWXXXXX 282
K + PKR +AY++W N + +K+D G + ++AKKAG W+SM DK EW
Sbjct: 556 KDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWNDKAA 613
Query: 283 XXXXQYXVHLXSFNANGGG 339
+Y + + NGGG
Sbjct: 614 QDKARYEAEMKEYKKNGGG 632
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +1
Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWXXXXXXX 288
K + PKR MSA+ W+ IK PG+ V ++AK AG W + DKS W
Sbjct: 23 KDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADD 80
Query: 289 XXQYXVHLXSF 321
+Y V + ++
Sbjct: 81 KKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +1
Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWXXXXXXX 288
K + PKR MSA+ W+ IK PG+ V ++AK AG W + DKS W
Sbjct: 23 KDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADD 80
Query: 289 XXQYXVHLXSF 321
+Y V + ++
Sbjct: 81 KKRYEVDIANY 91
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWXXXXX 282
K + PKR SAY+ W + + +K+D G V ++AKK G W++M DK +W
Sbjct: 551 KDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEEKAE 608
Query: 283 XXXXQYXVHLXSFNANG 333
+Y + + NG
Sbjct: 609 EDKSRYEKEMKEYRKNG 625
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 118 DXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 264
D KRPM+A+++W + DNP + +EI+K+ G W+ + ++ +
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEK 94
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 109 KMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 264
K ++ KRPM+A+++W I + P + EI+K+ G WRS+ D+ +
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEK 139
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 103 GFKMTDXPKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 264
G K D KRPM+A+++W + +NP + +EI+K+ G W+ + ++ +
Sbjct: 53 GKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEK 106
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWXXXXXXXXXQ 297
P+RP+ Y+ + ++ +NP ++ +I K G+ W + D KS +
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKAD 85
Query: 298 YXVHLXSFNANG 333
Y + F NG
Sbjct: 86 YEKQMKHFQGNG 97
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWR 243
PKR +SA+ + I+ +P KV ++A++ G++W+
Sbjct: 134 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 173
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 181 KDDNPGLKVTEIAKKAGEIWRSMYD 255
K N ++VTEI+KK E W++M D
Sbjct: 65 KYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWR 243
PKR +SA+ + I+ +P KV ++A++ G++W+
Sbjct: 133 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 172
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 181 KDDNPGLKVTEIAKKAGEIWRSMYD 255
K N ++VTEI+KK E W++M D
Sbjct: 66 KYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWR 243
PKR +SA+ + I+ +P KV ++A++ G++W+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 181 KDDNPGLKVTEIAKKAGEIWRSMYD 255
K N ++VTEI+KK E W++M D
Sbjct: 66 KYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 124 PKRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWR 243
PKR +SA+ + I+ +P KV ++A++ G++W+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 181 KDDNPGLKVTEIAKKAGEIWRSMYD 255
K N ++VTEI+KK E W++M D
Sbjct: 66 KYPNENVQVTEISKKCSEKWKTMVD 90
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 127 KRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
KRPM+A+++W I P + + I+K G W+ M
Sbjct: 179 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 219
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 127 KRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
KRPM+A+++W I P + + I+K G W+ M
Sbjct: 176 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 216
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 127 KRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
KRPM+A+++W I P + + I+K G W+ M
Sbjct: 282 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 322
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 127 KRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
KRPM+A+++W I P + + I+K G W+ M
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 370
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 127 KRPMSAYLLWLNXAXSXIKDDNPGLKVTEIAKKAGEIWRSM 249
KRPM+A+++W I P + + I+K G W+ M
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 370
>Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical
protein F57C7.2b protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 628 STFYYELSNKKVXYLNLSNKSQKEKKHSFHGPEFKM 521
S + ++ Y NLS++SQ KH FH F M
Sbjct: 357 SVLFCGIAQAHYTYNNLSDESQSNTKHFFHMVSFIM 392
>Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical
protein F57C7.2a protein.
Length = 630
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 628 STFYYELSNKKVXYLNLSNKSQKEKKHSFHGPEFKM 521
S + ++ Y NLS++SQ KH FH F M
Sbjct: 357 SVLFCGIAQAHYTYNNLSDESQSNTKHFFHMVSFIM 392
>AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H
exchanger isoform 5b protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 628 STFYYELSNKKVXYLNLSNKSQKEKKHSFHGPEFKM 521
S + ++ Y NLS++SQ KH FH F M
Sbjct: 357 SVLFCGIAQAHYTYNNLSDESQSNTKHFFHMVSFIM 392
>AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H
exchanger isoform 5a protein.
Length = 630
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 628 STFYYELSNKKVXYLNLSNKSQKEKKHSFHGPEFKM 521
S + ++ Y NLS++SQ KH FH F M
Sbjct: 357 SVLFCGIAQAHYTYNNLSDESQSNTKHFFHMVSFIM 392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,432,701
Number of Sequences: 27780
Number of extensions: 154268
Number of successful extensions: 370
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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