Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p06
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    34   0.012
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    28   1.1  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    27   1.4  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   1.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.4  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    25   5.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   5.6  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   7.4  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   7.4  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.8  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -2

Query: 458 IEKSIXQSMNLKSGSWILSGLCMGVKCRAASA*TPYWSRVCFGLESHLFLVGHQRAWSDQ 279
           I+KS+ + + LK+  W++  LC+    +     T  +S +  G+ + L +VG+Q  W   
Sbjct: 36  IDKSLNRKLKLKTDLWVMPLLCLISAFQYMDKSTSNYSSI-MGIRTDLNMVGNQYNWVGT 94

Query: 278 SF 273
           SF
Sbjct: 95  SF 96


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 178 DLNEKRTMVVKGDMHIGGVMLKLTESFGKE 267
           ++++  T+   GD HIG ++ K  E  GKE
Sbjct: 174 EISQVATISANGDTHIGELLAKAMERVGKE 203


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 244 LTESFGKEFKKDWSDHALWWPT 309
           L  SF  E KK W+  +LW+ T
Sbjct: 9   LLRSFAAEMKKPWTAESLWYET 30


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 322 LSRPKHTLDQYGVHADAA-LHFTPMHKPLRIQLPDLRFIDCXIDFSIDTFS 471
           LSR   TL  + V+ + A +   P+H  LR +L DL   DC  D    TFS
Sbjct: 300 LSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFECTFS 350


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 130 GEIVGDGSWNLTIYVTDLNEKRTMVVK 210
           GEI+G+GS++  +  T+ + KR   +K
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIK 128


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 139 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKK 276
           +G G++++++   +          GD H+GG     +L   F +EFK+
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKR 245


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +1

Query: 136  IVGDGSWNLTIYVTDLNEKRT-----MVVKGDMHIGGVMLKLT 249
            +V D S NL +   D     +     +V +GD HIG V+  +T
Sbjct: 1270 VVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMT 1312


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 433  IDCXIDFSIDTFSAVIQLCKNLGIRHSEELSLCY 534
            +D  +    D+   +I++  +LG    EE+S CY
Sbjct: 984  LDAQVQSCADSTELLIKVLSDLGSTEDEEISDCY 1017


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 284 RTMPSGGRLETNGSPDQNTP--WTSTEFTRTPP 376
           +T+   G+L+  G P++NTP  W+ +    + P
Sbjct: 365 KTLKKEGKLDKYGRPNENTPADWSKSYIDYSDP 397


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 299 QRAWSDQSFLNSLP 258
           QRAW+D  +++SLP
Sbjct: 57  QRAWNDLEYISSLP 70


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -1

Query: 351  LVQGVFWSGEPFVSSRPPEGMVRPIFLELFTKALSQF*HNAADVHVTFD---DHRPFFVQ 181
            LV+  F +   ++ S  PE    PI+ EL  + +S    N + +   +D    H   F++
Sbjct: 1832 LVKSSFDNIFSYIFSEEPESKKSPIWFELPLQVISSQSQNISQLLNVYDFISSHSDIFIE 1891

Query: 180  IRHINREVP 154
              H  R VP
Sbjct: 1892 --HRGRYVP 1898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,309
Number of Sequences: 5004
Number of extensions: 42816
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)