Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p01
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.47 
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    28   1.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   1.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.3  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.3  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    27   3.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.8  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   7.7  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
 Frame = -2

Query: 571 PTSTSTP--ASIGTTSAGISTPNIPSSF*ATSA 479
           PTS+S+   +SI T S+GIS+ +IPS+F + S+
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTFSSVSS 578


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/70 (20%), Positives = 35/70 (50%)
 Frame = +2

Query: 227 RYNLENPLSISGSHVTNTDRLIKDHDYVQVVKETVPKNNKRVTRSKGNVEAVIVDPVEPP 406
           ++N   P+ +S S  ++TD+++KD  + +++   +  +   + +SK  +   +     P 
Sbjct: 181 KWNHSAPVIVSISRFSSTDQILKDSSFCEMLLVRMLGSVHEIGKSKNPLLVPVYSVSSPS 240

Query: 407 SKRTRAKTKK 436
            K + +K  K
Sbjct: 241 PKDSLSKVTK 250


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 197 LNAPFSYLIIFVVTFVLHSRSSRLLNPMNSSLVTQFLIE 81
           +  P +  +  V  F+  SRSS++  PMN  + TQF++E
Sbjct: 383 MRRPKTICLTVVSRFLRKSRSSQI--PMNVDISTQFIVE 419


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = -2

Query: 619 AYAESRYIFSFSMRVAPTSTSTPASIGTTSAGISTPNIPSSF*ATSA 479
           A + S Y +S S  + PT+ ST  S+ + S   S+P+  SSF  TSA
Sbjct: 504 ATSSSPY-YSNSSIIVPTTVSTSGSVSSFS---SSPSPTSSFSGTSA 546


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 510 IFLALFERPLPVSGVREICCVPSEFFL 430
           IF AL E P PVSG   +   P +F L
Sbjct: 394 IFSALSETPTPVSGNGNVADAPPDFSL 420


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 290 IKDHDYVQVVKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQISRT 469
           ++ H+ +++VKE +         S  N + V++D  E  +   R  +K N   T+Q   T
Sbjct: 181 LERHEAMELVKEAIEAGIFNDLGSGSNCDLVVID--EEKATPYRGYSKPNERATKQSKYT 238

Query: 470 PETG 481
            + G
Sbjct: 239 YDRG 242


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 577 VAPTSTSTPASIGTTS----AGISTPNIPSSF*ATS 482
           VAPTST T +   TTS    +  STP+  SS   TS
Sbjct: 645 VAPTSTFTSSGFNTTSGLPTSSASTPSSNSSIVPTS 680


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 601 TDFQHRQHRLLPRHISLANIIRY 669
           +DF  + H  +P+ I LA +IRY
Sbjct: 170 SDFVAKSHSNIPKDIELACVIRY 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,497
Number of Sequences: 5004
Number of extensions: 47864
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)