Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27p01
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 36 0.039
12_02_0703 + 22282219-22282430,22286054-22287620,22287751-222883... 31 0.84
04_03_0498 + 16574250-16574312,16576576-16577457,16578624-165787... 31 0.84
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 29 3.4
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 28 6.0
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 6.0
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 28 6.0
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 28 6.0
04_01_0475 - 6196747-6197065,6197193-6197236,6198649-6198721,619... 28 7.9
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 206 TFNDSFDRYNLENPLSISGSHVTNTDRLIKDHDYVQVVK-ETVPKNNKRVTRSKGNVEAV 382
++ D + E + + +D D +VVK E P+++K ++K +
Sbjct: 1542 SYEDQWTEEEFEKLCQVDSPDSPQPGGISRDADVPKVVKLEVPPESSKEPEQAKKEPASS 1601
Query: 383 IVDPVEPPSKRTRAKTKKNSEGTQQISRTPETGR 484
+ D PP+KR R + +++ ++ P TG+
Sbjct: 1602 VGD--SPPAKRRRGRPRRSDASLSPVTAPPNTGK 1633
>12_02_0703 +
22282219-22282430,22286054-22287620,22287751-22288371,
22288434-22288484
Length = 816
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 290 IKDHDYVQVVKETVPKNNKRVTRSKGNVEAVIVDPV--EPPSKRTRAKTKKNSEGTQQIS 463
I H Y+ KE N K++T + +V ++ + PP K+ T+K ++ T+ ++
Sbjct: 565 ILKHLYICYTKED--DNLKKLTEAMKDVLPKMLKEILPSPPLKQGEKHTEKGTDATKFVT 622
Query: 464 RTPETGRG 487
+ PE G G
Sbjct: 623 QDPEIGEG 630
>04_03_0498 +
16574250-16574312,16576576-16577457,16578624-16578714,
16578802-16578857,16579527-16579640
Length = 401
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 320 KETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGT-QQISRTPETGR 484
K T + + T GN A++V +EPP RT+AK K S T + + R+ +GR
Sbjct: 294 KRTKREASYPTTPLNGNTGALVV--IEPPLTRTKAKGKALSLATPESLKRSTRSGR 347
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +2
Query: 281 DRLIKDHDYVQVVKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQI 460
++L DH+ V + P K+V N E V P+ PP+KR T +I
Sbjct: 124 EKLRADHNIQDVRSKIFPLKRKKV-----NAEEV-ESPIAPPAKRKERSISSLVVNTPEI 177
Query: 461 SRTPETGRGRSKRA 502
TP++ GR RA
Sbjct: 178 --TPKSLTGRRTRA 189
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 338 NNKRVTRSKGNVEAVIVD-PVEPPSKRTRAKTKKNSEGT 451
+N+ ++ N V+ D PV+ RA+ KKNS+GT
Sbjct: 134 DNEDEAAAESNTPQVLADIPVQRARNWARARVKKNSDGT 172
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 359 SKGNVEAVIVD-PVEPPSKRTRAKTKKNSEGT 451
+K N V+ D P++ RA+ KKNS+GT
Sbjct: 222 AKSNTPQVLADIPIQRARNCARARVKKNSDGT 253
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 317 VKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQ 457
V E V NK++ RS N I+ P P S A ++ EG+ +
Sbjct: 156 VHEAVIAGNKQLVRSSSNRRVGIIKPNSPKSPVASASAFESVEGSDE 202
>01_06_1357 +
36632992-36633621,36634003-36635136,36635525-36636193,
36636250-36636343,36636378-36636490
Length = 879
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 392 PVEPPSKRTRAKTKKNS-EGTQQISRTPETGRGRSKR 499
P P +K TR +TKKN+ E + P RGR R
Sbjct: 349 PSPPKAKTTRRRTKKNTQESDSEGEEEPPKRRGRRTR 385
>04_01_0475 -
6196747-6197065,6197193-6197236,6198649-6198721,
6198823-6198933,6199023-6199196,6199285-6199466
Length = 300
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 574 APTSTSTPASIGTTSAGISTPNIPSSF*ATSAG 476
A ++ ST + GT+SAG S NI S++ T G
Sbjct: 255 AASTDSTAGASGTSSAGASGTNIDSNYYVTMKG 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,991,680
Number of Sequences: 37544
Number of extensions: 270172
Number of successful extensions: 855
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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