Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27p01
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical p... 33 0.19
Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical pr... 33 0.19
AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribo... 33 0.19
AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribo... 33 0.19
U41105-14|AAA82408.2| 399|Caenorhabditis elegans Hypothetical p... 31 0.76
Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical pr... 31 1.0
Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA hai... 31 1.0
AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone stem-... 31 1.0
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 30 1.8
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ... 30 1.8
U28412-5|AAC46595.1| 229|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr... 29 4.1
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro... 29 4.1
AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical ... 29 4.1
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb... 28 5.4
U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical pr... 28 7.1
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 27 9.4
AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical ... 27 9.4
AC025722-7|AAK68510.1| 540|Caenorhabditis elegans Hypothetical ... 27 9.4
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 27 9.4
>Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical
protein F20C5.1d protein.
Length = 705
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 293 KDH-DYVQV-VKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQISR 466
KD+ DYV V VP +R GN DP EP S+ ++ + E + +
Sbjct: 17 KDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEPKSRDVFVSSQSSDESQEDSAE 76
Query: 467 TPETGRGRSKRARNI 511
PE + S+ N+
Sbjct: 77 NPEIAKEVSENCENL 91
>Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical
protein F20C5.1b protein.
Length = 764
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 293 KDH-DYVQV-VKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQISR 466
KD+ DYV V VP +R GN DP EP S+ ++ + E + +
Sbjct: 17 KDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEPKSRDVFVSSQSSDESQEDSAE 76
Query: 467 TPETGRGRSKRARNI 511
PE + S+ N+
Sbjct: 77 NPEIAKEVSENCENL 91
>Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical
protein F20C5.1a protein.
Length = 781
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 293 KDH-DYVQV-VKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQISR 466
KD+ DYV V VP +R GN DP EP S+ ++ + E + +
Sbjct: 17 KDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEPKSRDVFVSSQSSDESQEDSAE 76
Query: 467 TPETGRGRSKRARNI 511
PE + S+ N+
Sbjct: 77 NPEIAKEVSENCENL 91
>AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 short form protein.
Length = 764
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 293 KDH-DYVQV-VKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQISR 466
KD+ DYV V VP +R GN DP EP S+ ++ + E + +
Sbjct: 17 KDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEPKSRDVFVSSQSSDESQEDSAE 76
Query: 467 TPETGRGRSKRARNI 511
PE + S+ N+
Sbjct: 77 NPEIAKEVSENCENL 91
>AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 long form protein.
Length = 781
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 293 KDH-DYVQV-VKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQISR 466
KD+ DYV V VP +R GN DP EP S+ ++ + E + +
Sbjct: 17 KDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEPKSRDVFVSSQSSDESQEDSAE 76
Query: 467 TPETGRGRSKRARNI 511
PE + S+ N+
Sbjct: 77 NPEIAKEVSENCENL 91
>U41105-14|AAA82408.2| 399|Caenorhabditis elegans Hypothetical
protein T02G5.13a protein.
Length = 399
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -1
Query: 566 LYQYSGFYWHDLCWYFDP*YS*LFLSDLCRSRASVKSAAYLRSS 435
L QYS +W D Y DP LF S + SRA++ SA L S
Sbjct: 48 LEQYSRVHWDDSVTYDDPNVQKLFKSLMSGSRAALASAITLVES 91
>Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical
protein R06F6.1 protein.
Length = 367
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 335 KNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNS--EGTQQISRTPETGRGRSKRAR 505
+N +T + + E V+++ P R R + ++ EG R PETG+ K R
Sbjct: 116 RNGDTITTVEEHTETVVMESSSGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPR 174
>Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA
hairpin-binding protein protein.
Length = 367
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 335 KNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNS--EGTQQISRTPETGRGRSKRAR 505
+N +T + + E V+++ P R R + ++ EG R PETG+ K R
Sbjct: 116 RNGDTITTVEEHTETVVMESSSGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPR 174
>AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone
stem-loop binding proteinCDL-1 protein.
Length = 367
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 335 KNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNS--EGTQQISRTPETGRGRSKRAR 505
+N +T + + E V+++ P R R + ++ EG R PETG+ K R
Sbjct: 116 RNGDTITTVEEHTETVVMESSSGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPR 174
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 395 VEPPSKRTRAKTKKNSEGTQQISRTPETGRGRSKRARN 508
+ PP R K K++ + ++ SR+P RGR+ +R+
Sbjct: 135 ISPPPSENREKEKQSRDKERRRSRSPRDRRGRATTSRS 172
>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
protein F28H6.4 protein.
Length = 1000
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +2
Query: 398 EPPSKRTRAK---TKKNSEGTQQISRTPETGRGRSKRARN 508
EPPSKRT+ + TK+NS+ S+TPE G+ K+ +
Sbjct: 33 EPPSKRTQKRSSLTKRNSK-----SKTPEVGKAPRKQTEH 67
>U28412-5|AAC46595.1| 229|Caenorhabditis elegans Hypothetical
protein T19C3.4 protein.
Length = 229
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 406 WRLYWIHYYCFNIPFRSCNTFIVLWHSFFDDLDIVVVFY 290
W +YWI + ++ + + W F+ L IV +F+
Sbjct: 37 WMMYWIVFAIYSFLENLLDLVLAFWFPFYFQLKIVFIFW 75
>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
protein F52E10.1 protein.
Length = 1201
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 344 KRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQI 460
+ V RSKG + I D V PP + +AK + S G + +
Sbjct: 840 RAVLRSKGIMVNSISDFVAPPDELAKAKASQESAGQESV 878
>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
protein protein.
Length = 1203
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 344 KRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQI 460
+ V RSKG + I D V PP + +AK + S G + +
Sbjct: 842 RAVLRSKGIMVNSISDFVAPPDELAKAKASQESAGQESV 880
>AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical
protein Y73B3A.1 protein.
Length = 659
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 332 PKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTK-KNSEGTQQISRTPETGRGRSKRA 502
PK+ K V +++ VE P +PP+K T K K +E I R E SK++
Sbjct: 449 PKSEKAVEKAEEKVEKKPKSPQKPPAKPTAQKPPLKKTEEVDGIER--EASESSSKKS 504
>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical protein
D2023.2 protein.
Length = 1175
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 348 VLHDLKGMLKQ**WIQ*SRHQKELVRRPKRTPKVRSRFHGRPRPAEVAQKEL 503
V DL G ++ ++ KE+V RP+ P VR G P P +V + ++
Sbjct: 1072 VFFDLNGQMRSI-FVVDKEASKEIVTRPRALPGVRGHI-GAPMPGDVLELKI 1121
>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
carboxylase protein.
Length = 1175
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 348 VLHDLKGMLKQ**WIQ*SRHQKELVRRPKRTPKVRSRFHGRPRPAEVAQKEL 503
V DL G ++ ++ KE+V RP+ P VR G P P +V + ++
Sbjct: 1072 VFFDLNGQMRSI-FVVDKEASKEIVTRPRALPGVRGHI-GAPMPGDVLELKI 1121
>U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical
protein F32E10.6 protein.
Length = 374
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +2
Query: 296 DHDYVQVVKETVPKNNKRVTRSKGNVEAVIVDPV--EPPSKRTRAKT-KKNSEGTQQISR 466
D + + VKE PK + + T+ + + +PV + K RA+T ++ + +++ +
Sbjct: 202 DEEEEEEVKEKSPKKSSKSTKRAASDDDEEEEPVATKKSKKSKRAETPEEEDDEEEEVVK 261
Query: 467 TPETGRGRSKRA 502
TP+ + +SKRA
Sbjct: 262 TPKKTK-KSKRA 272
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 215 DSFDRYNLENPLSISGSHVTNTDRLIKDHDYVQVVKETVPKNNKRVTRSKG 367
D R+++ N L + G H + T L+KD + + T+ + + + T ++G
Sbjct: 366 DQVGRFDMSNELLMPGEHTSATVLLMKDMPLRKGMPFTLREGSSKTTIARG 416
>AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical
protein W02F12.5 protein.
Length = 463
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 486 VAQKELGILGVEIPAEVVPIEAGVLVEVGATLIEKLKIYRL 608
VA+ E VE+PA LVE GA + K K+Y+L
Sbjct: 96 VAEIETDKTSVEVPAPQAGTIVEFLVEDGAKVTAKQKLYKL 136
>AC025722-7|AAK68510.1| 540|Caenorhabditis elegans Hypothetical
protein Y50D4C.5 protein.
Length = 540
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 389 DPVEPPSKRTRAKTKKNSEGTQQISRTPETGR 484
DP EP +RT + KN+E +I + E R
Sbjct: 47 DPAEPKFRRTYSMAAKNNEKIDKIPESTEKNR 78
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 215 DSFDRYNLENPLSISGSHVTNTDRLIKDHDYVQVVKETVPKNNKRVTRSKG 367
D R+++ N L + G H + T L+KD + + T+ + + + T ++G
Sbjct: 366 DQVGRFDMSNELLMPGEHTSATVLLMKDMPLRKGMPFTLREGSSKTTIARG 416
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,803,677
Number of Sequences: 27780
Number of extensions: 267119
Number of successful extensions: 1116
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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