Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27p01
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 399 SRHQKELVRRPKRTPKVRSRFH 464
           S HQKELVRR  R       +H
Sbjct: 254 SWHQKELVRRDSRRKNYGGVYH 275


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 568 TSTSTPASIGTTSAGISTPNIPSSF*ATSAGLG 470
           +STS PA+I TT+   +T    ++  AT+   G
Sbjct: 99  SSTSLPATITTTTTTTTTTTATAAATATTTATG 131


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 448 TFGVLFGLRTSSF*WRLYWIHYYCFNIPFRSCNTFI 341
           T GV+ G+      + + W+ ++C NI    C T I
Sbjct: 273 TVGVIMGV------FLICWVPFFCVNIVTSYCKTCI 302


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 385 YYCFNIPFRSCNTFIVLWHSFFDDLDIV 302
           YY   I    C   IV W SF+ D   V
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFWLDQSAV 270


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 385 YYCFNIPFRSCNTFIVLWHSFFDDLDIV 302
           YY   I    C   IV W SF+ D   V
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFWLDQSAV 270


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 5   NQNNLYFEFNNKTVTVDQVCTNVNNFLLKI 94
           N NN  + +NN     +    N NN   K+
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKL 354


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 236 NYNDRNYH*TCLLLNAPFSYL 174
           NYN+ NY+  C  L    +Y+
Sbjct: 99  NYNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 236 NYNDRNYH*TCLLLNAPFSYL 174
           NYN+ NY+  C  L    +Y+
Sbjct: 99  NYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 236 NYNDRNYH*TCLLLNAPFSYL 174
           NYN+ NY+  C  L    +Y+
Sbjct: 99  NYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 236 NYNDRNYH*TCLLLNAPFSYL 174
           NYN+ NY+  C  L    +Y+
Sbjct: 99  NYNNNNYNNNCKKLYYNINYI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,013
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)