Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27o17
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    31   0.20 
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    29   0.82 
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    25   7.7  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   7.7  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -2

Query: 655  TTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVST---VAVLPSAVTETSAATDLT 485
            TTAV E ++S   +T      +STV P + V  +  V+T   V+   SA T T+++T   
Sbjct: 1395 TTAVTETSSSGYYTTIVSSTVVSTVVPGSTVYPVTHVTTTTGVSGESSAFTYTTSSTQYE 1454

Query: 484  FLEGVTSSFQRLTVLVS 434
                VT+S+   +V  S
Sbjct: 1455 PSTVVTTSYYTTSVYTS 1471


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 384 DSEASETALPASDAEKSETNTVSLWNDDVTPSKNVKSVAADVSVTADGN 530
           DSE++   LP  D+   +     LWN D    K+V+ ++ +  + A GN
Sbjct: 182 DSESTPILLPLIDSLNHKPKQPILWNSDFQDEKSVQLISQE--LVAKGN 228


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -2

Query: 670 EASFATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVLPSAVTETSAATD 491
           EA      V+E    V++ T  PL+  S  A  +   +L +  +    P    +    T 
Sbjct: 82  EACKLDARVIEAIGEVLRGTERPLITTSVTAVLSSNGKLGTEISEVPQPPIPRQLGEVTT 141

Query: 490 LTFL-EGVTSSFQRL 449
           L F  +GV +S  RL
Sbjct: 142 LKFASQGVRASILRL 156


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 584 SRNIK*RPSRGFDHRCCNFNYSSSSKR 664
           S +I  + SR F H   NFN+S+ +KR
Sbjct: 217 SADIPAKSSRLFPHGIYNFNFSAPNKR 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,199
Number of Sequences: 5004
Number of extensions: 32770
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)