Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27o12
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    25   8.6  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.6  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   8.6  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 41  SGFLLNLFVEIRQIRDMFVY 100
           SG +L+ FV  R I+D F Y
Sbjct: 519 SGMILSRFVSPRSIKDTFAY 538


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 20  TEERSFYSGFLLNLFVEIRQIRDMFVYNFFDM*Q*QSYLKVQTGLM 157
           T+E+ F +    NLF ++++ R+  + N ++M      L  +TGLM
Sbjct: 154 TDEQPFETDSSANLFKQLQEKRNRTIGNVYEM---ACLLVFKTGLM 196


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 396 VNDKKVSYNTDFSYGGH 346
           V+  K S+++D+SYG H
Sbjct: 238 VDSSKYSHDSDYSYGAH 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,391
Number of Sequences: 5004
Number of extensions: 31345
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)