Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27o09
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 32 0.069
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 29 0.49
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 29 0.64
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 3.4
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.4
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 4.5
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 6.0
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 6.0
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr... 26 6.0
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 26 6.0
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.9
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 32.3 bits (70), Expect = 0.069
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -1
Query: 277 FTRVQAQGEFLLNSRRLAERSINNMIPFHCH*TYFGYSRRITVISR---DIGGFQVNKNE 107
F +V+ + L +S L +RS++ + PF TYFG+ I I + + VN+NE
Sbjct: 200 FGKVEGEISALYDSVLLVDRSLDRITPFLTQLTYFGFLDEILGIQQMNVKLPSSLVNRNE 259
Query: 106 SFDT 95
+ +T
Sbjct: 260 ASNT 263
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 48 LQFKHLKNVYRTEKWCVSKLSFLLTWKPPMSLEMTVIRRE 167
++F++ KN Y + + K+ F+L +E+++IRRE
Sbjct: 172 IEFEYSKNKYHLKDVIIGKIYFILVRIKVQRMEVSIIRRE 211
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 311 LSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKLKVMFSRD 490
LS+ +EP + F++ID F SI+ + +YNG D +L N + +MF D
Sbjct: 503 LSHLSKRYEPEVGNDAFEVIDDFNSIY-----IYSYNGER-DELVLNNLRPRYVIMFDSD 556
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 299 EVTKLSNELLEHEPPFNLEVFKIIDTF 379
E +L NE L+H+P + E+ + DTF
Sbjct: 189 EYEELRNECLKHDPQLDAEIRTLQDTF 215
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +2
Query: 533 SIKSNLNMQETDCTDEIDFYKPSTSMQNINESTPKRQKIVLNQIQLKKK 679
S S+ + Q + + + F PS +++++ +P+R+ ++ LK+K
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRK 182
>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 131
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 524 DIDSIKSNLNMQETDCTDEIDFYKPSTSMQN 616
D+D +SNLN+Q+ +EI +K + N
Sbjct: 49 DLDRFRSNLNVQQEQLQNEILGFKQDVKLLN 79
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 359 FKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKL 469
+ I++ F + F PAC+ N SF F + L KL
Sbjct: 128 YDILEQFNAPFVVPACVGTRNTISFSFHVTPPALSKL 164
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 299 EVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKLKVM 478
E KL NE ++ E EV K L++F+E L Y S F I K KLK +
Sbjct: 514 EAEKLYNEQVDREKSQFKEVEKQNQP-LAVFSESNTLGDYKVDSSVFEISKQNRSKLKTL 572
Query: 479 FS 484
+
Sbjct: 573 LA 574
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 470 KVMFSRDVFCADCLYGFYDIDS 535
+V+FS FC + LY +Y D+
Sbjct: 80 RVLFSSPSFCGNTLYTYYGFDN 101
>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 101 ETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIV 211
E FV ++ VPR+D N + E S+ +K HI+
Sbjct: 96 EVFVHRNIANV-VPRSDINALAVMEYSVTVLKVKHII 131
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.0
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = +2
Query: 143 RNDGNTTRITEISLVAVKRNHIVNTPFGETP----RVQQKLTLCLYPRKFISTGATEVTK 310
RN R E+ L+ K+N + + P ++QQK + K +S+ TE+
Sbjct: 278 RNKIRQRREEELRLLEQKKNEELLRTIDKAPAISKKLQQKDKAEKFSNKAVSSSTTEIKL 337
Query: 311 LSNELLEHEPPFNLEVFKIIDTFLSIFTE 397
+ +H P N K+ D S E
Sbjct: 338 KKKKFGKHRLPNNPLEIKLGDELTSSLRE 366
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 227 ETPRVQQKLTLCLYPRKFISTG 292
E+P + ++ +YP+ FISTG
Sbjct: 14 ESPTINDLTSITIYPQCFISTG 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,650
Number of Sequences: 5004
Number of extensions: 57162
Number of successful extensions: 249
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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