Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27o07
(550 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 41 1e-05
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 41 1e-05
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 40 2e-05
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 38 9e-05
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 28 0.072
M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee homeobox-... 26 0.22
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 26 0.29
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 25 0.38
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 25 0.67
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.6
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 22 3.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 3.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 22 4.7
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 6.2
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 8.2
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 40.7 bits (91), Expect = 1e-05
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +1
Query: 472 RVVYSDHQRLELEKEFHYSRYITIRR 549
R Y+ +Q LELEKEFHY+RY+T RR
Sbjct: 12 RQTYTRYQTLELEKEFHYNRYLTRRR 37
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 40.7 bits (91), Expect = 1e-05
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +1
Query: 472 RVVYSDHQRLELEKEFHYSRYITIRR 549
R Y+ +Q LELEKEFHY+RY+T RR
Sbjct: 274 RQTYTRYQTLELEKEFHYNRYLTRRR 299
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 39.5 bits (88), Expect = 2e-05
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1
Query: 466 KYRVVYSDHQRLELEKEFHYSRYITIRR 549
+ R Y+ +Q LELEKEFH++RY+T RR
Sbjct: 10 RQRTSYTRYQTLELEKEFHFNRYLTRRR 37
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 37.5 bits (83), Expect = 9e-05
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 472 RVVYSDHQRLELEKEFHYSRYITIRR 549
R Y+ Q LELEKEFHY+ Y+T RR
Sbjct: 12 RQTYTRFQTLELEKEFHYNHYLTRRR 37
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 27.9 bits (59), Expect = 0.072
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 445 GKTRTKDKYRVVYSDHQRLELEKEFHYSRYITIRR 549
G T + + R +S Q L++EF +RY+T RR
Sbjct: 15 GGTPEEKRPRTAFSGEQLARLKREFAENRYLTERR 49
>M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H17. ).
Length = 79
Score = 26.2 bits (55), Expect = 0.22
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 448 KTRTKDKYRVVYSDHQRLELEKEFHYSRYITI 543
K + K R ++ Q L LEK+F +Y+TI
Sbjct: 5 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLTI 36
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 25.8 bits (54), Expect = 0.29
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 94 HRPSIAHTLAVTNNTTAPITRHATDDVVI 8
H P I T TN+ T + H TD+ I
Sbjct: 1368 HSPQITLTATTTNSLTMKVRPHPTDNAPI 1396
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 25.4 bits (53), Expect = 0.38
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 472 RVVYSDHQRLELEKEFHYSRYITIRR 549
R +S Q L++EF +RY+T RR
Sbjct: 24 RTAFSAEQLARLKREFAENRYLTERR 49
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 24.6 bits (51), Expect = 0.67
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 356 QDLGLHNHRARRGRHTSG*KNQTIRPNQIQVKRALKTN 469
QD +NH + RH+S NQ + Q + K+N
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSN 457
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 324 IPPGRRRHIGYLSFSWFPF 268
+PPG + + +WFPF
Sbjct: 102 VPPGIFKSTCKIDIAWFPF 120
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 324 IPPGRRRHIGYLSFSWFPF 268
+PPG + + +WFPF
Sbjct: 102 VPPGIFKSTCKIDITWFPF 120
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 324 IPPGRRRHIGYLSFSWFPF 268
+PPG + + +WFPF
Sbjct: 102 VPPGIFKSTCKMDIAWFPF 120
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 324 IPPGRRRHIGYLSFSWFPF 268
+PPG + + +WFPF
Sbjct: 102 VPPGIFKSTCKIDITWFPF 120
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 324 IPPGRRRHIGYLSFSWFPF 268
+PPG + + +WFPF
Sbjct: 170 VPPGIFKSTCKIDITWFPF 188
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 324 IPPGRRRHIGYLSFSWFPF 268
+PPG + + +WFPF
Sbjct: 170 VPPGIFKSTCKIDITWFPF 188
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 20 VRSVSRDRSGGVVCDGECVC 79
+R +++ R GG +G C+C
Sbjct: 83 IRCLAQRRKGGSCRNGVCIC 102
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 324 IPPGRRRHIGYLSFSWFPF 268
+PPG + + +WFPF
Sbjct: 139 VPPGIFKSTCKIDITWFPF 157
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 324 IPPGRRRHIGYLSFSWFPF 268
+PPG + + +WFPF
Sbjct: 102 VPPGIFKSTCKMDVAWFPF 120
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.8 bits (44), Expect = 4.7
Identities = 10/31 (32%), Positives = 12/31 (38%)
Frame = -3
Query: 101 LRSPSEHCTHTRRHKQHHRSDHETRYGRRSY 9
L SP EH HH H+ Y + Y
Sbjct: 58 LSSPPEHRDLPIYQSHHHLHHHQVLYQQSPY 88
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 6.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 408 DEKTKLSDPTKSR*NAH 458
D K KLSD T ++ N H
Sbjct: 435 DNKRKLSDSTMNKINNH 451
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Frame = -3
Query: 254 GSGVHSPVAGAPFHAHH 204
G+ P G P H HH
Sbjct: 339 GNHTMGPTMGPPHHHHH 355
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,971
Number of Sequences: 438
Number of extensions: 3156
Number of successful extensions: 23
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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