Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27o06
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39648-9|AAM15605.1| 186|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia t... 30 1.3
AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical... 29 2.3
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL023816-6|CAA19435.1| 341|Caenorhabditis elegans Hypothetical ... 27 9.4
AL022274-3|CAA18359.1| 341|Caenorhabditis elegans Hypothetical ... 27 9.4
AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein. 27 9.4
AC006804-1|AAF60755.1| 340|Caenorhabditis elegans Hypothetical ... 27 9.4
>U39648-9|AAM15605.1| 186|Caenorhabditis elegans Hypothetical
protein T13C5.6 protein.
Length = 186
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 463 FVRRRRPVPM-NKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSV 639
+ R RP+ +KL+E D +SFPSGH+SRA ++ ++ Y + + ++ P + + + V
Sbjct: 85 YFHRERPIKTYSKLLEHTVDIYSFPSGHSSRAAML-LVMAY--NAAPLYVIPFIPFPLVV 141
Query: 640 SISRVLAERHYL 675
+SRV RHY+
Sbjct: 142 GLSRVALGRHYI 153
>AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia
telangectasia mutated)family protein 1 protein.
Length = 649
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 313 IENDSVKTLEQLFLVLCQQMSS*FEHHTAKFFST 212
++ +S +T Q+F+ +CQQ S F H FST
Sbjct: 430 VQTESTETRRQVFVEICQQYSPVFRHFFYTNFST 463
>AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical
protein T15B7.14 protein.
Length = 650
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 153 FFLPQMY*LYYFIRVVLCKFYSFTIDT*TYIEFKIKIY 40
F+L + L+YF+ + L +Y+F DT ++I+ + +Y
Sbjct: 130 FYLKSVLMLFYFLFIALTSYYAF--DTFSWIQHYVNVY 165
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 181 ETEKKRQTP----PMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEI 324
+TE+ Q P PML + +Q+ + + LK L S+ H Q++E+
Sbjct: 1664 DTEEDAQLPEKNKPMLTYLRSLVLQLVHSPISSVLKCCLLLSVEQHKQMIEV 1715
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 181 ETEKKRQTP----PMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEI 324
+TE+ Q P PML + +Q+ + + LK L S+ H Q++E+
Sbjct: 1673 DTEEDAQLPEKNKPMLTYLRSLVLQLVHSPISSVLKCCLLLSVEQHKQMIEV 1724
>Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical
protein K08H2.1 protein.
Length = 176
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 573 NERDEHSPACMSGWE*ELIRTNFHELIH 490
NE +H+ ++ W+ + IRTN L+H
Sbjct: 70 NEDQDHAQRILTAWDVQFIRTNSAILLH 97
>AL023816-6|CAA19435.1| 341|Caenorhabditis elegans Hypothetical
protein T05G11.7 protein.
Length = 341
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +1
Query: 550 RAVLISFILIYFDSVSIIFYPPLMAWV-VSVSISRVLAERH 669
R+ L+SFIL+Y D++S I L W+ V++++ R LA ++
Sbjct: 99 RSYLLSFILLYSDALSKI-SQKLSVWLGVTMAMLRFLAVKY 138
>AL022274-3|CAA18359.1| 341|Caenorhabditis elegans Hypothetical
protein T05G11.7 protein.
Length = 341
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +1
Query: 550 RAVLISFILIYFDSVSIIFYPPLMAWV-VSVSISRVLAERH 669
R+ L+SFIL+Y D++S I L W+ V++++ R LA ++
Sbjct: 99 RSYLLSFILLYSDALSKI-SQKLSVWLGVTMAMLRFLAVKY 138
>AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein.
Length = 172
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 573 NERDEHSPACMSGWE*ELIRTNFHELIH 490
NE +H+ ++ W+ + IRTN L+H
Sbjct: 66 NEDQDHAQRILTAWDVQFIRTNSAILLH 93
>AC006804-1|AAF60755.1| 340|Caenorhabditis elegans Hypothetical
protein Y53G8B.2 protein.
Length = 340
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = -3
Query: 313 IENDSVKTLEQLFLVLCQQMSS*FEHHTAKF 221
+EN + + +++L + CQ+++ F+ H K+
Sbjct: 299 VENPTKEQIDELHTIYCQKLTELFDEHKEKY 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,152,973
Number of Sequences: 27780
Number of extensions: 309722
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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