Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27o06
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.2  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 414 HINLQLVKIFTIK 376
           ++NL +VK+FTIK
Sbjct: 289 YVNLVIVKVFTIK 301


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 577 IYFDSVSIIFYPPLMAWVVSVSISRVLAERH 669
           + F ++   F P L+   V   IS V+A RH
Sbjct: 199 VIFSAMGSFFLPMLVMLYVYGRISCVIASRH 229


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 7   LYSTYTDIIH*INFNFKFYISLGVYCK 87
           L  TY  +   I+F     + LG+YC+
Sbjct: 188 LTPTYAVVSSSISFYVPCIVMLGIYCR 214


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 547 LHVRMGMRTYQDQL 506
           + + MGMRTY+D L
Sbjct: 97  IDIFMGMRTYEDFL 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,336
Number of Sequences: 438
Number of extensions: 3633
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)