Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27o02
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0529 + 10276063-10277439                                         31   0.71 
07_01_0737 + 5614552-5616196,5617425-5617600,5617811-5617930,561...    31   0.71 
02_04_0238 + 21186072-21186883,21187315-21189346                       29   2.9  
10_08_0438 + 17919355-17919391,17919491-17919544,17919928-179201...    29   3.8  
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    28   8.7  
02_05_1334 - 35765973-35766068,35766272-35766353,35766448-357664...    28   8.7  

>09_02_0529 + 10276063-10277439
          Length = 458

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 3/145 (2%)
 Frame = +1

Query: 304 MAPLVGADPDEISIT-GCTTIN--IHQTISTFYKPTAEKYKILVDDINFPTDRYAVDGQI 474
           +A LVGADP EI  T G T  N    + +  FY+            +   T+   V    
Sbjct: 111 VASLVGADPREIFFTSGATECNNIAVKGVMRFYRDRRRHV------VTTQTEHKCVLDSC 164

Query: 475 RLKGLNPRDAVKLVKSRDGKFMSEDDIIEAMTEDVAIILLPAVYYRSAQILDMTKITKAA 654
           R       +   L    DG  +    + +A+  D  ++ + AV      +  + +I +  
Sbjct: 165 RYLQQEGFEVTYLPVRPDG-LVDVAQLADAIRPDTGLVSVMAVNNEIGVVQPLEEIGRIC 223

Query: 655 KERNIFIGWDFCHAIGAIEIDLKAL 729
           KE+ +    D   A+G I ID+  +
Sbjct: 224 KEKGVPFHTDAAQALGKIPIDVNQM 248


>07_01_0737 +
           5614552-5616196,5617425-5617600,5617811-5617930,
           5618589-5618669,5618769-5618804,5618872-5618922,
           5618923-5618988,5620755-5620976,5622147-5622308,
           5622321-5622491
          Length = 909

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
 Frame = +1

Query: 394 KPTAEKYKILVDDINFPTD-RYAVDGQIRLKGLNPRDAVKLVK-----SRDGKFMSEDDI 555
           KP A  Y+ L+       +    +    RL  LNP D+   V+     + DG++ +  +I
Sbjct: 484 KPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGNAAEI 543

Query: 556 IEAMTEDVAIILLPAVYYRSAQILDMTKITKAAKERNIFIGWDFCHAIGAIEIDLKA 726
            EAM+E ++   L    ++   +LD+  + K A +  +  G  + H +G I  DLK+
Sbjct: 544 REAMSEYMSGGSLYDFLHKQHNVLDLPTLLKFAVD--LCRGMCYLHQMGIIHRDLKS 598


>02_04_0238 + 21186072-21186883,21187315-21189346
          Length = 947

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -2

Query: 531 SITTFDQFNRVSWVESL*SYLTINSVSIRREINIVNQNLVFFCGRLVESADRLVYINGGA 352
           SIT+  + +R+S +  L   ++  S  +  ++   N NLV   GRL   + R +YI G  
Sbjct: 678 SITSLQELSRLSNLRVL--VMSWRSFGMIGDVRSYNNNLVSSLGRLGTCSLRSIYIQGYN 735

Query: 351 TCYTDF 334
           +   DF
Sbjct: 736 SSLQDF 741


>10_08_0438 +
           17919355-17919391,17919491-17919544,17919928-17920186,
           17920396-17920484,17920645-17920775,17920900-17920946,
           17921029-17921137,17921217-17921303,17921521-17921692,
           17921837-17922309,17922402-17922463,17922537-17922639,
           17923535-17923636
          Length = 574

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = +1

Query: 463 DGQIRLKGLNPRDAVKLVKSRDG----KFMSEDDIIEAMTEDVAIILLPAVYYR-SAQIL 627
           D +  +  ++  DAV LV+++          +D+I++ M EDV +I   A       +  
Sbjct: 372 DDKKEVVAISEEDAVNLVEAKTSINLHSDQEKDEIVKPMEEDVKVIEKTATMRGFKVEGE 431

Query: 628 DMTKITKAAKERNIFIGWDFCHAIGAIEIDLKAL 729
           D+  +TK  K+  +    + CH I    + +K++
Sbjct: 432 DIPVMTKVPKDETLDSRDETCHVIYTQNLVVKSI 465


>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = +1

Query: 301 IMAPLVGADPDEISITGCTTINIHQTISTFYKPTAEKYKILVDDINFPTDRYAVDGQIRL 480
           ++ P+ G   + + +    T     TIS  Y PT  KYKI    ++FP++   VD  + L
Sbjct: 156 VINPVTG---ESLHVPSLPTATRAGTISFGYHPTTGKYKI----VHFPSNGGLVD-DVTL 207

Query: 481 KGLNPRDAVKLVKSRDGKFMSEDDIIEAMT 570
                  +     SR G+    D +++ +T
Sbjct: 208 GDSAAASSSSSSPSRHGRGGHGDGVVDVLT 237


>02_05_1334 -
           35765973-35766068,35766272-35766353,35766448-35766485,
           35766601-35766657,35766795-35766858,35766947-35767043,
           35767604-35767656,35767837-35767921,35768649-35769675
          Length = 532

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 469 QIRLKGLNPRD----AVKLVKSRDGKFMSEDDIIEAMTEDVAIILLP 597
           Q RL  +N  D    AV + KSRD K   E++++E + + +  +L+P
Sbjct: 234 QKRLGNINGVDGLLQAVAMYKSRDPKTSDEEEMLENLFDCLCCVLMP 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,831,185
Number of Sequences: 37544
Number of extensions: 379589
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)