Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27o02
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-5|AAB52668.1|  478|Caenorhabditis elegans Hypothetical pr...   138   3e-33
AF303267-1|AAG50225.1|  478|Caenorhabditis elegans kynureninase ...   138   3e-33
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF098995-4|AAC67484.2|  301|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    28   7.9  

>U56965-5|AAB52668.1|  478|Caenorhabditis elegans Hypothetical
           protein C15H9.7 protein.
          Length = 478

 Score =  138 bits (335), Expect = 3e-33
 Identities = 79/236 (33%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
 Frame = +1

Query: 73  PEFPKFLDNNDQLGHFRQRF-YIKQGT---------------IYMCGNSLGLACKDAEET 204
           P   +FL ++D L   R  F Y K GT               IY+CGNSLGL  K   E 
Sbjct: 40  PALAEFLSDSDALKEIRDLFHYPKAGTLPDADPSLVDPESDSIYLCGNSLGLMPKATGEV 99

Query: 205 LYEVLNKWKDEGIKMWNVDQGKYFLYSEFLADIMAPLVGADPDEISITGCTTINIHQTIS 384
           + + L+KW   G+      +  +    E+  + +  LVGA  +E+S+    T+NIH  ++
Sbjct: 100 MKDHLDKWAKMGVFGHMSGEVPWAHCDEYCLEGVGRLVGAKKEEVSVCNSLTVNIHVLLT 159

Query: 385 TFYKPTAEKYKILVDDINFPTDRYAVDGQIRLKGLNPRDAVKLVKSRDGK--FMSED--D 552
           +FYKPT  ++KIL++   FP+D YA++ QIRLKG   +D++  ++ R+G+    +ED  D
Sbjct: 160 SFYKPTETRHKILLESKAFPSDHYAIESQIRLKGRTVQDSMVCLEPREGEETLRTEDILD 219

Query: 553 IIEAMTEDVAIILLPAVYYRSAQILDMTKITKAAKERNIFIGWDFCHAIGAIEIDL 720
            IE   +++AI+    + Y + Q+ DM  IT+A   +  F+G+D  HA   + + L
Sbjct: 220 YIEKNGDEIAIVFFSGIQYYTGQLFDMRAITEAGHRKGCFVGFDLAHAFANVPLHL 275


>AF303267-1|AAG50225.1|  478|Caenorhabditis elegans kynureninase
           protein.
          Length = 478

 Score =  138 bits (335), Expect = 3e-33
 Identities = 79/236 (33%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
 Frame = +1

Query: 73  PEFPKFLDNNDQLGHFRQRF-YIKQGT---------------IYMCGNSLGLACKDAEET 204
           P   +FL ++D L   R  F Y K GT               IY+CGNSLGL  K   E 
Sbjct: 40  PALAEFLSDSDALKEIRDLFHYPKAGTLPDADPSLVDPESDSIYLCGNSLGLMPKATGEV 99

Query: 205 LYEVLNKWKDEGIKMWNVDQGKYFLYSEFLADIMAPLVGADPDEISITGCTTINIHQTIS 384
           + + L+KW   G+      +  +    E+  + +  LVGA  +E+S+    T+NIH  ++
Sbjct: 100 MKDHLDKWAKMGVFGHMSGEVPWAHCDEYCLEGVGRLVGAKKEEVSVCNSLTVNIHVLLT 159

Query: 385 TFYKPTAEKYKILVDDINFPTDRYAVDGQIRLKGLNPRDAVKLVKSRDGK--FMSED--D 552
           +FYKPT  ++KIL++   FP+D YA++ QIRLKG   +D++  ++ R+G+    +ED  D
Sbjct: 160 SFYKPTETRHKILLESKAFPSDHYAIESQIRLKGRTVQDSMVCLEPREGEETLRTEDILD 219

Query: 553 IIEAMTEDVAIILLPAVYYRSAQILDMTKITKAAKERNIFIGWDFCHAIGAIEIDL 720
            IE   +++AI+    + Y + Q+ DM  IT+A   +  F+G+D  HA   + + L
Sbjct: 220 YIEKNGDEIAIVFFSGIQYYTGQLFDMRAITEAGHRKGCFVGFDLAHAFANVPLHL 275


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = -2

Query: 147 TLFYVKP-LPEMSQLVVIVQKFWK-----FWSVLILVHIIKLITYVNAMF 16
           +L Y  P L   +  VVI+   WK     F+   I   II  IT+VNAMF
Sbjct: 9   SLIYAVPSLTLYAVTVVIIILHWKNVKSSFYQFYIFEFIINTITFVNAMF 58


>AF098995-4|AAC67484.2|  301|Caenorhabditis elegans Hypothetical
           protein F58E1.7 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +1

Query: 19  HRIY-IRYKFNNM---YEYQDGPEFPKFLDNNDQLGHFRQRFYIKQGTIYMCGNSLGLAC 186
           H+++ + Y + ++   Y   DG EF   L NND+   +R  +         CG  L +  
Sbjct: 208 HKLFSLEYLYGSLKIQYMKADGLEFLSALHNNDECLMYRVSYETNVKVSADCGMWLVVVL 267

Query: 187 KDAEETLY 210
           KD +  L+
Sbjct: 268 KDLQRVLF 275


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 91  LDNNDQLGHFRQRFYIKQGTIYMCGNSLGLACKDAEETLYEVLNKWKDEGIKMWNVDQGK 270
           LD+ D LG+  +  Y   G   +  N   L  KDA  TL + L  W++  I++   ++  
Sbjct: 781 LDSGDVLGYVVR--YRLAGYSSLTWNEKNLTTKDARNTLVDELITWREYEIQVAAYNKRG 838

Query: 271 YFLYSE 288
             ++SE
Sbjct: 839 LGVFSE 844


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,400,975
Number of Sequences: 27780
Number of extensions: 344118
Number of successful extensions: 913
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)