Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27o01
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.70 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 192 ERFEGRKNSRDML---MGRSRESPRSESMFPGENTDTAKRERATFKTH 326
           +R + RKN    +   M  +RE+P    + PG++ D A ++   FK H
Sbjct: 248 KRIQMRKNRFQKIAESMKTARENPGPPGV-PGDHGDHAPKQTVRFKVH 294


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +2

Query: 365 KKTVGIYARLRQD*THGKRYTRAGCVPTVGP*LPDVRACAVETARAEGTVL 517
           ++ +  Y R R+D     RYT  G V   G    D+R        A  TVL
Sbjct: 129 QEVISHYRRTRRD-----RYTNLGLVNEQGQTWHDLRVALTSELTAASTVL 174


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 RSRESPRSESMFPGENTDTAKRERATFKTHMAQKERDRKMEAERRQSV 380
           R R+S RSE    G  + T +      +  M Q+ER+R+ E  +++ +
Sbjct: 14  RFRQS-RSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMI 60


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 RSRESPRSESMFPGENTDTAKRERATFKTHMAQKERDRKMEAERRQSV 380
           R R+S RSE    G  + T +      +  M Q+ER+R+ E  +++ +
Sbjct: 14  RFRQS-RSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMI 60


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 RSRESPRSESMFPGENTDTAKRERATFKTHMAQKERDRKMEAERRQSV 380
           R R+S RSE    G  + T +      +  M Q+ER+R+ E  +++ +
Sbjct: 14  RFRQS-RSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMI 60


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 RSRESPRSESMFPGENTDTAKRERATFKTHMAQKERDRKMEAERRQSV 380
           R R+S RSE    G  + T +      +  M Q+ER+R+ E  +++ +
Sbjct: 14  RFRQS-RSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMI 60


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 RSRESPRSESMFPGENTDTAKRERATFKTHMAQKERDRKMEAERRQSV 380
           R R+S RSE    G  + T +      +  M Q+ER+R+ E  +++ +
Sbjct: 14  RFRQS-RSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMI 60


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 RSRESPRSESMFPGENTDTAKRERATFKTHMAQKERDRKMEAERRQSV 380
           R R+S RSE    G  + T +      +  M Q+ER+R+ E  +++ +
Sbjct: 14  RFRQS-RSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMI 60


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 RSRESPRSESMFPGENTDTAKRERATFKTHMAQKERDRKMEAERRQSV 380
           R R+S RSE    G  + T +      +  M Q+ER+R+ E  +++ +
Sbjct: 14  RFRQS-RSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMI 60


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 RSRESPRSESMFPGENTDTAKRERATFKTHMAQKERDRKMEAERRQSV 380
           R R+S RSE    G  + T +      +  M Q+ER+R+ E  +++ +
Sbjct: 14  RFRQS-RSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMI 60


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 144 TSDTFERKRSPYYDDFERFE 203
           T+D F+  +  YY++++ +E
Sbjct: 394 TADAFKDLQDKYYEEYKMYE 413


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 502 GRNCSHHWKRTTNPLFWTYF 561
           GR  S  W++  N + WT F
Sbjct: 127 GRKKSSGWRKLRNIVHWTPF 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,279
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)