Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27n18
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.48 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.48 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 246 LLSSLGFNQNSCPNTLHTK*ICITQMFILQTINDIETSIR*KNDF 112
           L S   F+ + CP  +H   IC+   FI +    +E S + K D+
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICV--RFIAEHTKMLEDSTKVKEDW 511


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 246 LLSSLGFNQNSCPNTLHTK*ICITQMFILQTINDIETSIR*KNDF 112
           L S   F+ + CP  +H   IC+   FI +    +E S + K D+
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICV--RFIAEHTKMLEDSTKVKEDW 511


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 171 MFILQTINDIETSIR*KNDFTSNKQDYKISTVG 73
           M I+  +N + T+     D   N   YK+ TVG
Sbjct: 434 MKIVNMLNQLYTAFDVLTDPKKNPNVYKVETVG 466


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 162 LQTINDIETSIR*KNDFTSNKQD 94
           LQT+N  E  +R  ND   N++D
Sbjct: 173 LQTLNLTENRLRDINDIGLNRRD 195


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 165 ILQTINDIETSIR*KNDFTSNKQDYKISTVG 73
           I+  +N + T+     D   N   YK+ TVG
Sbjct: 436 IVNMLNQLYTAFDVLTDPKKNPNVYKVETVG 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,949
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)