Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27n16
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.61 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   3.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 446 YFPCILMTVVLCXXXXXXXXXXXXLSGFTKLLLTSVSDFYCRSIY 312
           Y PCI+M  + C            +   TKL  TS++  + R ++
Sbjct: 202 YVPCIVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKSFVRKVH 246


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 346 LRFLTFIVDRYIKSVILHCCTSTV 275
           +R +T I D Y  +++LH  T+T+
Sbjct: 114 VRLVTAIGDAYGVALLLHMLTTTI 137


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 100 ELSSCEEISGI*NDY*LCIFEFPT 171
           EL  C+E     +DY  C+ ++ T
Sbjct: 516 ELKQCDEFVEDSDDYWNCVIQYNT 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,087
Number of Sequences: 438
Number of extensions: 2098
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)