Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27m24
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 29 0.32
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 0.98
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 27 2.3
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 25 5.2
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 5.2
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 5.2
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 5.2
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 6.9
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.9
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 29.5 bits (63), Expect = 0.32
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 201 IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLH 377
I +Q S L + L++ ++LD+ +K + TP ++++ L+KG KA F +H
Sbjct: 183 ILVQAFSPLTRGYRLSDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKA--SSFVHIH 239
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 27.9 bits (59), Expect = 0.98
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 2 NFYFLNPKGCG*FNFA*NMFEL*HFCKNAAFFKYCCSLCSMS-SGFALTQ 148
N Y PKGCG N ++F+ ++ N+ +F+ S + S FA Q
Sbjct: 374 NIYINGPKGCGKSNLVHSLFD--YYSLNSIYFQMIVSCSEIDRSSFAKFQ 421
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 2.3
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Frame = +3
Query: 78 VKMLRFLSTAVRYAR--CLPASPLHNAITLTTKDVRHFSAFKNIE-----IQPRSLLPQN 236
VKM F V+ R C+ A AI + + + S + + +Q S L
Sbjct: 185 VKMTSFTGEKVQVQRLHCMNARVPSTAIGIFSHGAKQSSPLQQLGRIGSMVQINSDLSTR 244
Query: 237 SLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHWGGWIR 395
L+N QI ++ D + T ++ F KT+K V+ + L W W R
Sbjct: 245 KGLSN-QIAKEIVAQDPSSTSELLSFRSLVDSEKTIKDVLGQSTILEWVRWER 296
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 364 NRLITAFTVFLLPFFKLNFITDLVGVKSIFIKMSNI 257
NRL + T FL PF + N + + + F++ S I
Sbjct: 289 NRLKSELTDFLTPFARENRVVTKEDISNFFLERSRI 324
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 168 KDVRHFSA--FKNIEIQPRSLLPQNSLLA 248
K++ HF++ FKNI+IQ P+ LLA
Sbjct: 93 KELDHFTSKPFKNIDIQNEQTNPKQLLLA 121
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 207 IQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKT--VKAVIKRFFRLH 377
+Q R + Q + ++I+ + K T +IK LK+GK+K +K +KR+ LH
Sbjct: 124 LQMRLSIEQQCVSGIEKIMSLYSKEQKDKTDVIIK--LKEGKQKVNLLKRSLKRYNELH 180
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 361 RLITAFTVFLLPFFKLNFITDLVGVKSIFIK 269
+L A+ L F +L + LVG+K++FIK
Sbjct: 408 KLFQAYRKTLTQFVRLTRSSPLVGLKNLFIK 438
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 6.9
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +3
Query: 201 IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIK---FSLKKGKRKTVKAVIKRFFR 371
IE+ SLL N A IL+ + F+ SVI F+L + K T I +
Sbjct: 10 IEVVINSLLNDNPAQAKFDKYSILVSLGFSSLLSVILLCIFTLLRTKFNTYDRCIPPMKK 69
Query: 372 LHWGGWI 392
W GWI
Sbjct: 70 SLW-GWI 75
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 25.0 bits (52), Expect = 6.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 187 EKCLTSLVVSVIALC 143
EKC+T+L+++ I LC
Sbjct: 20 EKCITNLLITTILLC 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,459
Number of Sequences: 5004
Number of extensions: 43661
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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