Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27m24
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547...    30   0.99 
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413     29   2.3  
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    28   4.0  
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668...    28   5.3  
06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669           28   5.3  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    28   5.3  
05_07_0241 + 28609700-28611649                                         27   9.2  
03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     27   9.2  

>07_01_0716 +
           5472618-5472818,5472943-5472985,5473672-5473761,
           5473863-5473938,5474435-5474504,5474911-5475075,
           5475261-5475404,5475547-5475651,5475876-5476022,
           5476463-5476531,5476882-5476989,5477392-5477483,
           5477559-5477598,5478129-5478221,5478386-5478958,
           5479596-5479610
          Length = 676

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 17/57 (29%), Positives = 33/57 (57%)
 Frame = +3

Query: 87  LRFLSTAVRYARCLPASPLHNAITLTTKDVRHFSAFKNIEIQPRSLLPQNSLLANKQ 257
           L++ + +V+  +CL    + N +  T   +R+ SA K+I I     +PQ+SLL++ +
Sbjct: 300 LKYENNSVKAVKCLNEM-VTNGLIHTEDCLRYMSALKDITILRFCAIPQSSLLSSTE 355


>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
          Length = 677

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +3

Query: 42  ILHKICLNYNIFVKMLRFLSTAVRYARCLPASPLHNAITLTTKDVRHFSAFKNIE 206
           +LH++ L  + + + L   S++VR  + +P S  H +I +   DV H   F+N++
Sbjct: 553 LLHELALKVSSY-EYLAISSSSVRSVQ-IPPSVRHLSIVIDDTDVNHRVTFENVK 605


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 209 TT*ILVTSKFTSSQQTNIGHFNEN*FYPNK 298
           TT  ++T+K  +S Q NIGH +EN  Y  +
Sbjct: 19  TTNRIITAKDHASVQINIGHVDENGLYDGR 48


>09_03_0167 +
           12965030-12965356,12966100-12966387,12966704-12966826,
           12967229-12967611,12967863-12968190,12968324-12968353,
           12968837-12968989,12969510-12969815
          Length = 645

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 402 IGRHKKLWKKSSANKRRLRQHVFCNST 482
           IG HKK W++     RR +Q+VF  +T
Sbjct: 314 IGAHKKDWRRVRKVYRRSKQYVFVAAT 340


>06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669
          Length = 387

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 355 SSDFLDCTGVAGFGLKLEGTRNYGRNH 435
           +SD LDC G   FG+ L GT   G  H
Sbjct: 155 NSDHLDCHGGDAFGVALVGTDVAGTTH 181


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 336 KTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHV 467
           K +K   KR  R+H G  +  ++  H K  K S + K  L +HV
Sbjct: 421 KQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHV 464


>05_07_0241 + 28609700-28611649
          Length = 649

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 214 GCISIFLKAEKCLTSLVVSVIALCKGEAG 128
           GCI+ F  +    TSLVV V  L KG  G
Sbjct: 513 GCIAAFATSPVPSTSLVVVVAELLKGSGG 541


>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 221 LVTSKFTSSQQTNIGHFNEN*FYPNK 298
           ++T+K  +S Q NIGH +EN  Y  +
Sbjct: 23  IITAKDHASVQINIGHVDENGLYDGR 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,175,467
Number of Sequences: 37544
Number of extensions: 249572
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)