Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27m24
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical pr...    54   6e-08
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF101305-7|AAF98591.1|  279|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophi...    27   6.2  
AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine r...    27   8.2  

>Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical
           protein M01F1.6 protein.
          Length = 158

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = +3

Query: 306 IKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQ 485
           I+F  K G+++  + V+ RF RL+ G WI    GRHK  + K    ++    +  C   Q
Sbjct: 35  IRFDQKVGRKRPAQDVLDRFKRLNNGMWIHAHPGRHKLRYMKDETWQKTSLYYETCTKEQ 94

Query: 486 NTLLDKMVTKYW 521
             +LDK++T YW
Sbjct: 95  CEILDKLMTPYW 106


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 77  CKNAAFFKYCCSLCSMSSGFALTQCNYAYY*RCQTFLS 190
           C  +A    CCS+C  +     T+  YA+     TFLS
Sbjct: 17  CFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLS 54


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 77  CKNAAFFKYCCSLCSMSSGFALTQCNYAYY*RCQTFLS 190
           C  +A    CCS+C  +     T+  YA+     TFLS
Sbjct: 17  CFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLS 54


>AF101305-7|AAF98591.1|  279|Caenorhabditis elegans Hypothetical
           protein C04F5.8 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -2

Query: 484 CVELQNTCCLSLLLFADDFFHNFLCLPILVRIQPPQCSLKNRLITAFTVFLLPFFKLNFI 305
           C EL NTC +   L+ DD     +    L R   P CS ++ +   F    L   ++ F+
Sbjct: 42  CTEL-NTCEVDSFLYEDDDVEELVERDELSRTYCPVCSSRDTVPLNFISHSLSRLQVKFL 100

Query: 304 TDLV 293
            DL+
Sbjct: 101 FDLL 104


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 162 TTKDVRHFSAFKNIEIQPRSLLPQNSLLANKQ 257
           T KD++ FS  KN+++QP S   ++S + N++
Sbjct: 492 TEKDLKSFSIKKNVQVQPCSPSLKSSDIGNER 523


>AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform b
           protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 397 VRIQPPQCSLKNRLITAFTVFLLPFFKLNFITDLVGVKSIFIKMSNICLLARSEF 233
           V I P  CS    L   F  FL+P F L  ++  + + S+ +      LL  S F
Sbjct: 108 VPIYPTNCSFPKCLFLIFLFFLVPPFSLLLLSPALSI-SLLMSCPRFGLLVISRF 161


>AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine
           receptor, class z protein83 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 30  VVSLILHKICLNYNIFVKMLRFLSTAVRYARCLPASPLHNAITLTT 167
           V S+ILH + L+    + ++RFL   + YA C     L  A  LTT
Sbjct: 75  VFSIILHTL-LHVIHEIVIIRFLIVVIFYALCFTMYHLTKAFYLTT 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,581
Number of Sequences: 27780
Number of extensions: 244930
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)