Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27m21
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 46 3e-06
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 32 0.057
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 30 0.30
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 28 0.93
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 27 2.8
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 4.9
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 6.5
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 8.6
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 8.6
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 46.4 bits (105), Expect = 3e-06
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +1
Query: 250 AAIGFNIIGH--GAASGFPAILLPQLHQPDSGFKLTRSQDSWLASTVGLTLLLGSFSAAS 423
A IG + G+ G SG ++ L G +LT ++ S L LLG A +
Sbjct: 94 AGIGGLLFGYDTGVISGALVVIGTSL----GGHELTNGGKEFITSATSLGALLGGIIAGA 149
Query: 424 VMGTKGRKAAHYTISVLGIVGWVITILATSFWLLIVGRIILG 549
+ GRK S++ IVG ++ + A W +IVGR ++G
Sbjct: 150 LADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIG 191
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 32.3 bits (70), Expect = 0.057
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +1
Query: 214 KITPYMKQCFVTAAIGFNIIGH--GAASGFPAILLPQLHQPDSGFKLTRSQDSWLASTVG 387
KI+ ++ A I + G+ G SG A+L D G L+ Q + S
Sbjct: 76 KISSWIWVLSAVAGISGLLFGYDTGVISGALAVL-----GSDLGHVLSSGQKELITSATS 130
Query: 388 LTLLLGSFSAASVMGTKGRKAAHYTISVLGIVGWVITILATSFWLLIVGRIILG 549
L+ + ++ + GRK + ++G VI + + +++VGR I+G
Sbjct: 131 FAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVG 184
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 29.9 bits (64), Expect = 0.30
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 454 HYTISVLGIVGWVITILATSF----WLLIVGRIILGI 552
HY +S + I+GW + + T F W L++ R++LGI
Sbjct: 109 HYYLSAM-IIGWSLVTIFTCFVRHYWSLVLTRLLLGI 144
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 370 LASTVGLTLLLGSFSAASVMGTKGRKAAHYTISVLGIVGWVITILATSFWL-LIVGRIIL 546
L TV L G+ ++ G+K + S I+G ++ + A W+ ++VG++
Sbjct: 61 LTGTVNAGCLFGAMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTAVPSWVQIMVGKLFT 120
Query: 547 GISFVMMIPLRSALIGEYTSP 609
G++ + L E P
Sbjct: 121 GLTIGALSVLSPGYQSEVAPP 141
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 493 ITILATSFWLLIVGRIILGISFVMMIPLRSALI 591
I++L + FW L++G + G + P+ LI
Sbjct: 392 ISLLTSDFWSLVIGIHVFGYHVYWLYPIAFVLI 424
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 295 FPAILLPQLHQPDSGFKLTRSQDSW 369
FP+ ++PQL DS ++ D W
Sbjct: 84 FPSSVMPQLRPLDSSLSVSPEMDGW 108
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 425 TEAAEKLPSKRVKPTVDANQESCDLVSLKP 336
TE E +P+KR K V +Q + D KP
Sbjct: 1844 TERDEDIPNKRAKNKVSTDQTAADNKVTKP 1873
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 201 KNDAKNNTLHETMFRNSCDRVQHHWSRSRQRV 296
K +++ TL F NS +R Q + + S+QR+
Sbjct: 211 KKSSESATLGRAFFNNSMNRPQRYLTISKQRL 242
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 415 AASVMGTKGRKAAHYTISVLGIVGWVITIL 504
AAS++G G+ H+T VL +G ++ +L
Sbjct: 358 AASLVGAAGQSQGHFT-EVLNGIGTILLVL 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,032
Number of Sequences: 5004
Number of extensions: 47518
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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