Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27m15
(191 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 86 7e-19
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 86 7e-19
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 1.8
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 1.8
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 24 3.2
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 24 3.2
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 23 4.2
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 23 4.2
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 23 5.6
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 23 5.6
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz... 23 5.6
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 23 5.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 23 7.4
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 22 9.8
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 22 9.8
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 22 9.8
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 85.8 bits (203), Expect = 7e-19
Identities = 38/63 (60%), Positives = 50/63 (79%)
Frame = +2
Query: 2 RCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGL 181
+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G
Sbjct: 143 KVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGG 202
Query: 182 HVA 190
HVA
Sbjct: 203 HVA 205
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 85.8 bits (203), Expect = 7e-19
Identities = 38/63 (60%), Positives = 50/63 (79%)
Frame = +2
Query: 2 RCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGL 181
+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G
Sbjct: 143 KVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGG 202
Query: 182 HVA 190
HVA
Sbjct: 203 HVA 205
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 16 CRLSTHHYWCSCLWSYEGCC*RWPQCSSF 102
C ST+ + CLW++ C +P+ SS+
Sbjct: 123 CSASTNSHSYDCLWNFS--CNSFPEYSSY 149
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 108 KDSLAMMQNPKSSMLKYTGLTSLXCML 188
KDSL MM SS+L GLT+ ++
Sbjct: 788 KDSLGMMHFLTSSLLNEQGLTAFEVLM 814
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 90 LRPPSTAPFIAPKTRAPVVVRAKPTS 13
L P TAP I+P + +V+ +PTS
Sbjct: 263 LSSPETAPNISPVSPFAQLVKLEPTS 288
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 87 SMFLIPSKDSLAMM-QNPKSSMLKYTGLTSLXCML 188
S+++ +D++ M +N + M+KYTG+ L +L
Sbjct: 254 SLYITICQDAMRRMNENLEEGMVKYTGIQGLEDIL 288
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 23.4 bits (48), Expect = 4.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 151 SIELFGFCIIA--RESFDGMRNIEATVNSTLHSSKDTSTSSGAC*AYIQITS 2
++ L +C+I + N + L ++DT T AC +QITS
Sbjct: 604 NLSLSPYCLIKFIGDKDSDFENTRLHIVLALSDTEDTPTRLAACGILVQITS 655
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 83 GLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 178
G NVP + +F Y+ KKF+A H+FG
Sbjct: 141 GRNVPATAFQFVLYEQFKKKFSA---TDHVFG 169
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 93 FLIPSKDSLAMMQNPKSSML 152
FL+PS+DS + + PK + L
Sbjct: 139 FLLPSEDSSVIWRGPKKNGL 158
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 133 FCIIARESFDGMRNIEATVNS 71
FC+ DG+RN ATV++
Sbjct: 449 FCLRINPMLDGLRNSVATVDA 469
>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 20 GLARTTTGARVFGAMKGAVDGGLN 91
G++R V+G +K DGGL+
Sbjct: 65 GMSRVARHRLVYGLLKDEFDGGLH 88
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 162 LCTSALNFLDSAS*PGNL 109
LC S+ N +D S PGNL
Sbjct: 711 LCYSSNNAIDPVSAPGNL 728
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 144 NFLDSAS*PGNLLME*GTLRPPSTAPFIA 58
NFL+S++ N + + PP+ AP ++
Sbjct: 545 NFLESSTVQTNKYLPKSSASPPANAPIVS 573
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 81 PSTAPFIAPKTRAPVVVRAKPTSK 10
PSTA F+ P+ + + +RA+ K
Sbjct: 229 PSTARFLNPREKELMKIRAEQRQK 252
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 35 TTGARVFGAMKGAVDGGLNVPHSI 106
T+G +F A+ D ++VP S+
Sbjct: 3 TSGIEIFAALNDFTDAIVSVPESV 26
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +1
Query: 70 CC*RWPQCSSFHQKI 114
CC RW C H +I
Sbjct: 16 CCRRWIDCIECHNEI 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,668
Number of Sequences: 5004
Number of extensions: 12496
Number of successful extensions: 37
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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