Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27m15
         (191 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   1.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   3.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   3.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   4.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   5.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   5.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    19   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    18   9.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    18   9.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    18   9.4  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    18   9.4  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 103 GMRNIEATVNSTLHSSKD 50
           GM NIE  + +T +SSK+
Sbjct: 193 GMNNIETYIVNTNYSSKN 210


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 103 GMRNIEATVNSTLHSSK 53
           GM NIE  + +T +SSK
Sbjct: 193 GMNNIETYIVNTNYSSK 209


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 55  WSYEGCC*RWPQCSSFHQK 111
           WS       W  CSSF Q+
Sbjct: 407 WSVNAGMWMWLSCSSFFQQ 425


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 90  LRPPSTAPFIAPKTRAPVVVRAKP 19
           + P STA  ++ KTR     R  P
Sbjct: 97  ISPASTAKALSDKTRFDYFARTVP 120


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 90  LRPPSTAPFIAPKTRAPVVVRAKP 19
           + P STA  ++ KTR     R  P
Sbjct: 187 ISPASTAKALSDKTRFDYFARTVP 210


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 99  IPSKDSLAMMQN 134
           +PSKDSL  + N
Sbjct: 296 LPSKDSLVFVDN 307


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 139 FGFCIIARESFDGMRNIEATVNSTLHSSK 53
           F +C+   ESF   R  EA  N      K
Sbjct: 429 FLYCLAGDESFRKRRQREAAGNCRKRGEK 457



 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 157 YFSIELFGFCIIARESFDGM 98
           +F +  FG+CI     F G+
Sbjct: 309 WFLLMSFGYCIATLLEFAGV 328


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 94  NIEATVNSTLHSSKDTSTSSGAC 26
           N+  TVN T   +     S+G C
Sbjct: 151 NLNGTVNCTSSIASSGVVSAGEC 173


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 130 CIIARESFDGMRNIEATVNSTLHSSKDTST 41
           CI+ ++ FD + N    +   + S+ +  T
Sbjct: 45  CILIKDLFDNVHNHIQNIFKIIKSTNEKIT 74


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 130 CIIARESFDGMRNIEATVNSTLHSSKDTST 41
           CI+ ++ FD + N    +   + S+ +  T
Sbjct: 28  CILIKDLFDNVHNHIQNIFKIIKSTNEKIT 57


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 160 VYFSIELFGFCIIARES 110
           + F I  FG C   RES
Sbjct: 61  IIFVISFFGCCGAIRES 77


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 157 TQGSHLWXACC 189
           T+G H+  +CC
Sbjct: 2   TKGRHVVMSCC 12


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 99  IPSKDSLAMMQNPKSSM 149
           +PS   LAM+ + KS M
Sbjct: 822 VPSTKVLAMISSVKSFM 838


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -1

Query: 173 RCEPC 159
           RCEPC
Sbjct: 4   RCEPC 8


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 184 MQXKDVSPVYFSIELFGFCIIARESFDGMR 95
           MQ K+ +    + E FG    A   F G+R
Sbjct: 37  MQGKEKNSASLNSENFGIFKRALMGFQGVR 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,214
Number of Sequences: 438
Number of extensions: 785
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)