Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27m12
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 29 0.44
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 28 1.0
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 28 1.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 2.3
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 2.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 3.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.1
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 4.1
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 25 7.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.4
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 180 FSTFPSDDELYCARFTITPLTPD 112
FSTF DD Y +RF+ P+ P+
Sbjct: 187 FSTFTIDDSRYLSRFSFPPMMPE 209
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 404 RRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRT 520
+R+ + C+ CK C+ P Q I + + DG + T
Sbjct: 592 KRFVINSQNCVHCKTCDIKDPLQGIQWKTPQGGDGPKYT 630
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 533 IDMTKCIYCGFCQEACPVDAI 595
I T CI CG C + CP AI
Sbjct: 50 ISETLCIGCGICVKKCPFGAI 70
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 422 EERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 547
E CI C +C CP AI I S T RY + K
Sbjct: 52 ETLCIGCGICVKKCPFGAINIINLPTNLESEVTHRYSANSFK 93
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 338 ATINYPFEKGPLSPRFRGEHALRRYPS 418
+T +P+ KG RF H+L R PS
Sbjct: 85 STSPFPYLKGSFDDRFSSTHSLTRQPS 111
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 123 LTPDARTRDETENIFAKDIFSLN*VVSLELTEFINTSRRP 4
LTP+A + E E +KDI + N ++ L + + SR P
Sbjct: 597 LTPEATSEIEREKNESKDISTFNIILDLPVIREFDDSRPP 636
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 514 PRTVLTLFCFNRDSLCWT 461
P+ L L C RD LCWT
Sbjct: 604 PKIELLLPCSGRDDLCWT 621
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 384 SEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTI 533
S N L+V + K A+LV C K + +R+ + V G P + I
Sbjct: 999 SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 369 HCRLGSEVNMLYVATLQEKKGALLVSCA 452
H + G E+ LQ K+G L+ CA
Sbjct: 513 HAKTGEELTSAIKVALQNKEGPTLIECA 540
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 126 PLTPDARTRDETENIFAKDIFSLN*VVSLELT 31
PLTP +ET I KD L +VS+ +T
Sbjct: 336 PLTPGWSAHEETNRISPKDANVLPSIVSIPIT 367
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 155 SSSEGNVEKVYPQNIPGYKYVNAEEQ 232
S+S NV+++ PQN G K + EE+
Sbjct: 96 SNSLDNVQEINPQNTIGDKSAHTEEE 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,499
Number of Sequences: 5004
Number of extensions: 54633
Number of successful extensions: 134
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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