Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27m12
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 223 1e-58
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329... 35 0.048
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 34 0.085
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 31 0.79
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 29 4.2
11_02_0137 - 8702661-8703495,8703820-8704628 28 5.6
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 5.6
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 27 9.7
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 223 bits (545), Expect = 1e-58
Identities = 98/101 (97%), Positives = 101/101 (100%)
Frame = +2
Query: 344 INYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTT 523
INYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAEER+DGSRRTT
Sbjct: 78 INYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTT 137
Query: 524 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 646
RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEF+TETHEELL
Sbjct: 138 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 178
>05_01_0418 -
3288844-3288990,3289256-3289332,3289578-3289653,
3290125-3290220,3290307-3290376,3290474-3290564,
3290753-3290822,3290908-3291044,3291313-3291465,
3291816-3291864,3292205-3292366
Length = 375
Score = 35.1 bits (77), Expect = 0.048
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +2
Query: 443 KLCEAICPAQAITIEA----EE--RKDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 595
K CE +CPA AI +E EE + D S + +C CG C CP D I
Sbjct: 134 KPCEKVCPADAILLERVMIEEEHSQSDPSCGKLEGGVITERCYGCGRCLSVCPYDRI 190
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 34.3 bits (75), Expect = 0.085
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 422 EERCIACKL---CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 592
E+RC K C CP A + E SR + I CI CG C + CP DA
Sbjct: 17 EDRCRPSKCGQQCRKRCPVNATGRQCIEVTPSSRVSL---ISEELCIGCGICVKVCPFDA 73
Query: 593 I 595
I
Sbjct: 74 I 74
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 422 EERCIACKLCEAICPAQAITI 484
EE CI C +C +CP AI I
Sbjct: 56 EELCIGCGICVKVCPFDAIQI 76
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 143 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAQTMFWT-ELARGFAVTLA 319
A Y S + N+ YP++ P YK + ++ F + D + T+F +L G+ V +
Sbjct: 189 ASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYFPDLDDPSFNTVFGVRDLFYGYDVLVE 248
Query: 320 HIFKEPATINY 352
++ +PA + Y
Sbjct: 249 NLM-DPAHVPY 258
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 548 CIYCGFCQEACPVDAI 595
CI CG C + CP DAI
Sbjct: 55 CIGCGICVKKCPFDAI 70
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 422 EERCIACKLCEAICPAQAITIEAEERKDGSRRTT-RY 529
EE CI C +C CP AI I KD + TT RY
Sbjct: 52 EELCIGCGICVKKCPFDAIEI-INLPKDLEKDTTHRY 87
>11_02_0137 - 8702661-8703495,8703820-8704628
Length = 547
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 241 RHVLFLCIHIFISRYVLW 188
RH+L LCI +F++ Y W
Sbjct: 120 RHLLNLCIQVFLALYAFW 137
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 143 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAQTMFW 283
+Q + + N+E++ P+ + V AEE+D RA + +A M W
Sbjct: 156 SQVDGTYQFNLEELVPKLCELAQIVKAEEKDNMLRASTLQALSAMIW 202
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 218 SHIYIQVCSVGKPSQHFLLMMS 153
+H+Y++ G P HFLL+MS
Sbjct: 736 AHVYVEFQKRGLPHAHFLLIMS 757
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,182
Number of Sequences: 37544
Number of extensions: 346728
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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