Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27m12
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060840-1|AAL28388.1|  217|Drosophila melanogaster GM02062p pro...   291   7e-79
AE014297-2093|AAF55234.1|  217|Drosophila melanogaster CG3944-PA...   291   7e-79
AY070919-1|AAL48541.1|  217|Drosophila melanogaster RE02647p pro...   288   5e-78
AY089644-1|AAL90382.1|  611|Drosophila melanogaster RE71924p pro...    31   1.8  
AE014296-1555|AAN11979.1|  611|Drosophila melanogaster CG5651-PB...    31   1.8  
AE014296-1554|AAF50342.1|  611|Drosophila melanogaster CG5651-PA...    31   1.8  
U81788-1|AAB50404.1| 1921|Drosophila melanogaster kinesin-73 pro...    30   2.4  
BT011189-1|AAR88550.1| 1108|Drosophila melanogaster LP11192p pro...    30   2.4  
AE013599-2071|AAF58129.1| 1921|Drosophila melanogaster CG8183-PB...    30   2.4  
AE013599-2070|AAM70975.1| 1921|Drosophila melanogaster CG8183-PA...    30   2.4  
BT011165-1|AAR82833.1| 1796|Drosophila melanogaster AT07527p pro...    29   5.4  
AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p pro...    29   5.4  
AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA...    29   5.4  
X13382-1|CAA31759.1|  407|Drosophila melanogaster protein ( Dros...    29   7.2  
AY113244-1|AAM29249.1|  308|Drosophila melanogaster AT12460p pro...    28   9.5  
AE014134-2684|AAF53509.2|  308|Drosophila melanogaster CG4935-PA...    28   9.5  

>AY060840-1|AAL28388.1|  217|Drosophila melanogaster GM02062p
           protein.
          Length = 217

 Score =  291 bits (713), Expect = 7e-79
 Identities = 133/148 (89%), Positives = 137/148 (92%)
 Frame = +2

Query: 203 GYKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPR 382
           GY YVN +E  M F  ++DRAA TMF+ EL RGFAVTLAHIFKEPATINYPFEKGPLSPR
Sbjct: 42  GYVYVNNKELSMEFADITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSPR 101

Query: 383 FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCG 562
           FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER DGSRRTTRYDIDMTKCIYCG
Sbjct: 102 FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG 161

Query: 563 FCQEACPVDAIVEGPNFEFSTETHEELL 646
           FCQEACPVDAIVEGPNFEFSTETHEELL
Sbjct: 162 FCQEACPVDAIVEGPNFEFSTETHEELL 189


>AE014297-2093|AAF55234.1|  217|Drosophila melanogaster CG3944-PA
           protein.
          Length = 217

 Score =  291 bits (713), Expect = 7e-79
 Identities = 133/148 (89%), Positives = 137/148 (92%)
 Frame = +2

Query: 203 GYKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPR 382
           GY YVN +E  M F  ++DRAA TMF+ EL RGFAVTLAHIFKEPATINYPFEKGPLSPR
Sbjct: 42  GYVYVNNKELSMEFADITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSPR 101

Query: 383 FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCG 562
           FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER DGSRRTTRYDIDMTKCIYCG
Sbjct: 102 FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG 161

Query: 563 FCQEACPVDAIVEGPNFEFSTETHEELL 646
           FCQEACPVDAIVEGPNFEFSTETHEELL
Sbjct: 162 FCQEACPVDAIVEGPNFEFSTETHEELL 189


>AY070919-1|AAL48541.1|  217|Drosophila melanogaster RE02647p
           protein.
          Length = 217

 Score =  288 bits (706), Expect = 5e-78
 Identities = 132/148 (89%), Positives = 136/148 (91%)
 Frame = +2

Query: 203 GYKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPR 382
           GY YVN +E  M F  ++DRAA TMF+ EL RGFAVTLAHIFKEPATINYPFEKGPLSPR
Sbjct: 42  GYVYVNNKELSMEFADITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSPR 101

Query: 383 FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCG 562
           FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER DGSRRTTRYDIDMTKCIYCG
Sbjct: 102 FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG 161

Query: 563 FCQEACPVDAIVEGPNFEFSTETHEELL 646
           FCQEACPV AIVEGPNFEFSTETHEELL
Sbjct: 162 FCQEACPVGAIVEGPNFEFSTETHEELL 189


>AY089644-1|AAL90382.1|  611|Drosophila melanogaster RE71924p
           protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 422 EERCIACKLCEAICPAQAITI 484
           EE CI C +C   CP +AITI
Sbjct: 60  EELCIGCGICVKKCPFEAITI 80


>AE014296-1555|AAN11979.1|  611|Drosophila melanogaster CG5651-PB,
           isoform B protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 422 EERCIACKLCEAICPAQAITI 484
           EE CI C +C   CP +AITI
Sbjct: 60  EELCIGCGICVKKCPFEAITI 80


>AE014296-1554|AAF50342.1|  611|Drosophila melanogaster CG5651-PA,
           isoform A protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 422 EERCIACKLCEAICPAQAITI 484
           EE CI C +C   CP +AITI
Sbjct: 60  EELCIGCGICVKKCPFEAITI 80


>U81788-1|AAB50404.1| 1921|Drosophila melanogaster kinesin-73 protein.
          Length = 1921

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 111  HQELVV***NGHSTAHHQKEMLRRFTHRTYLDINM*MQRNKTCLSGLCQIE 263
            HQE+VV   N  STAH Q  M+ +F H     + +  +  + C+ G   IE
Sbjct: 902  HQEMVVPVINAESTAHDQ-NMVFKFEHTQDFTVTINEEFLEHCIEGALSIE 951


>BT011189-1|AAR88550.1| 1108|Drosophila melanogaster LP11192p protein.
          Length = 1108

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 111  HQELVV***NGHSTAHHQKEMLRRFTHRTYLDINM*MQRNKTCLSGLCQIE 263
            HQE+VV   N  STAH Q  M+ +F H     + +  +  + C+ G   IE
Sbjct: 902  HQEMVVPVINAESTAHDQ-NMVFKFEHTQDFTVTINEEFLEHCIEGALSIE 951


>AE013599-2071|AAF58129.1| 1921|Drosophila melanogaster CG8183-PB,
            isoform B protein.
          Length = 1921

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 111  HQELVV***NGHSTAHHQKEMLRRFTHRTYLDINM*MQRNKTCLSGLCQIE 263
            HQE+VV   N  STAH Q  M+ +F H     + +  +  + C+ G   IE
Sbjct: 902  HQEMVVPVINAESTAHDQ-NMVFKFEHTQDFTVTINEEFLEHCIEGALSIE 951


>AE013599-2070|AAM70975.1| 1921|Drosophila melanogaster CG8183-PA,
            isoform A protein.
          Length = 1921

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 111  HQELVV***NGHSTAHHQKEMLRRFTHRTYLDINM*MQRNKTCLSGLCQIE 263
            HQE+VV   N  STAH Q  M+ +F H     + +  +  + C+ G   IE
Sbjct: 902  HQEMVVPVINAESTAHDQ-NMVFKFEHTQDFTVTINEEFLEHCIEGALSIE 951


>BT011165-1|AAR82833.1| 1796|Drosophila melanogaster AT07527p
           protein.
          Length = 1796

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 96  HHEYEHQELVV***NGHSTAHHQKEMLRRFTHRT 197
           HH++ HQ L V     H   HHQ    RRF  RT
Sbjct: 298 HHQHAHQSLPV-EPKSHHHQHHQATNARRFITRT 330


>AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p
           protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 191 QNIPGYKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATI 346
           +NIPG + +N ++ ++   A      + + WTE A      L   +K+P+T+
Sbjct: 225 RNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTL 276


>AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA
           protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 191 QNIPGYKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATI 346
           +NIPG + +N ++ ++   A      + + WTE A      L   +K+P+T+
Sbjct: 225 RNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTL 276


>X13382-1|CAA31759.1|  407|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for put. ribosomal protein
           L1. ).
          Length = 407

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 191 QNIPGYKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATI 346
           +NIPG + +N ++ ++   A      + + WTE A      L   +K+P+T+
Sbjct: 225 RNIPGIETINVDKLNVLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTL 276


>AY113244-1|AAM29249.1|  308|Drosophila melanogaster AT12460p
           protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 500 KDGSRRTTRYDIDMTKCIYCG 562
           K G+ R  RY++D T C+ CG
Sbjct: 16  KQGAVRAVRYNVDGTYCLSCG 36


>AE014134-2684|AAF53509.2|  308|Drosophila melanogaster CG4935-PA
           protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 500 KDGSRRTTRYDIDMTKCIYCG 562
           K G+ R  RY++D T C+ CG
Sbjct: 16  KQGAVRAVRYNVDGTYCLSCG 36


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,826,635
Number of Sequences: 53049
Number of extensions: 617727
Number of successful extensions: 1745
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)