Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27m12
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical pr...   251   3e-67
AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH oxidored...   251   3e-67
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    32   0.30 
U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical
           protein T20H4.5 protein.
          Length = 212

 Score =  251 bits (615), Expect = 3e-67
 Identities = 117/153 (76%), Positives = 124/153 (81%), Gaps = 1/153 (0%)
 Frame = +2

Query: 191 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKG 367
           Q    YK+V    E D +     +     +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32  QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91

Query: 368 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 547
           PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE R DGSRRTTRYDIDMTK
Sbjct: 92  PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151

Query: 548 CIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 646
           CIYCG CQEACPVDAIVEGPNFE+STETHEELL
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEELL 184


>AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH
           oxidoreductase complex I 23.8kDa subunit protein.
          Length = 212

 Score =  251 bits (615), Expect = 3e-67
 Identities = 117/153 (76%), Positives = 124/153 (81%), Gaps = 1/153 (0%)
 Frame = +2

Query: 191 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKG 367
           Q    YK+V    E D +     +     +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32  QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91

Query: 368 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 547
           PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE R DGSRRTTRYDIDMTK
Sbjct: 92  PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151

Query: 548 CIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 646
           CIYCG CQEACPVDAIVEGPNFE+STETHEELL
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEELL 184


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
 Frame = +2

Query: 362 KGPLSPRFRGEHALRRYPSGEERCIA--CKL-CEAICPA-----QAITIEAEERKDGSRR 517
           KGPL      +  LR     ++RC    C L C+  CP      Q I +EA         
Sbjct: 4   KGPLIKNNETDVPLRIAIVEKDRCKPKNCGLACKRACPVNRQGKQCIVVEAT-------- 55

Query: 518 TTRYDIDMTKCIYCGFCQEACPVDAI 595
           +T   I    CI CG C + CP DAI
Sbjct: 56  STISQISEILCIGCGICVKKCPYDAI 81


>U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical
           protein F33G12.2 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 461 CPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCG 562
           CP   +   A + K G+ R  RY++D   C+ CG
Sbjct: 4   CPT--VRARAIDCKQGAVRAVRYNVDGNYCVTCG 35


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +2

Query: 449 CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTE 628
           CE  C    I ++ +      ++ ++  I  + C+    CQ AC  + +   PNF     
Sbjct: 449 CETKCIVAQIVLKIKNSYQQPQQLSQQYIPQSSCV--PQCQPACTQECVAAQPNFSVQIN 506

Query: 629 THEE 640
             +E
Sbjct: 507 MIDE 510


>Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical
           protein F10F2.4 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 499 TLF--CFNRDSLCWTNGFAQLTS 437
           TLF  C NRDS CW++   +LTS
Sbjct: 456 TLFSRCPNRDSPCWSDHLDELTS 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,678
Number of Sequences: 27780
Number of extensions: 322100
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)