Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27m05
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 48 2e-06
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 31 0.20
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 28 1.1
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 28 1.4
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 27 2.5
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 4.4
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 5.8
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 5.8
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 26 5.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.7
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.7
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Frame = +1
Query: 310 LDDDTIDAQSLLFLIAGYETSSTLLSFAIHVLATKPDLQETLRAHVQEMT-KGKEMSYEL 486
L + I + L+AG TS+ + + + +L +KP++ E L + + + E+ ++
Sbjct: 273 LKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQ 332
Query: 487 LAQMDYLEAFLQETLRIYPPVARVDRICTKPYIIPGTTVHVGVGDAVAIPVYGLHMDEDI 666
M L +QETLR++PP+ R + +PG+ + + + + + GL E+
Sbjct: 333 YKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYL-LAAPGLTATEEE 391
Query: 667 Y 669
Y
Sbjct: 392 Y 392
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 30.7 bits (66), Expect = 0.20
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 260 KSIRICKKSPFFDSEDRLSALAACSILTNSPV-YSIFRNDSRRYLIILGINTNN 102
K+IR C S + +ED LS L A +ILT P S F D+ R + I+G + N
Sbjct: 161 KAIRTCISSKQYGNEDFLSDLVAKAILTVLPKDPSKFNVDNIRVVKIMGSSLYN 214
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 143 SRRYLIILGINTNNMSNITRLYLGM*SNFSATLTNREFSLL 21
S++Y I G N +N++ + Y SN+ AT T+ F ++
Sbjct: 510 SKQYSIPEGFNVSNVTEYSSAYSASLSNYYATATSSVFQIV 550
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = +1
Query: 325 IDAQSLLFLIAGYETSSTLLSFAIHVLATKPDLQETLRAHVQEMTKGKEMSYELLAQMDY 504
++ Q + I G SST + + L P L ET+R E+TK + E+ +M
Sbjct: 92 LNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLE-EMRDEMFL 150
Query: 505 LEAFLQETLRIYPPVARVDRICTKPYIIP 591
+E + + V I TK +IP
Sbjct: 151 PVEDDEELMDLADEDEEVQEILTKYNVIP 179
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = +1
Query: 445 VQEMTKGKEMSYELLAQMDYLEAFLQETLRIYPPVARVDRICTKPYIIPGTTVHVGVGDA 624
V+EM G E S ++ A++D L + R + +D P + PGT V +G A
Sbjct: 60 VEEMAPGAETSLKI-AELDRK---LMD--RCDGGIFCLDPFRRAPDMDPGTAVELGYMAA 113
Query: 625 VAIPVYGLHMDEDIYPE 675
P+ G D +YPE
Sbjct: 114 QGKPLAGFTTDGRMYPE 130
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 27.1 bits (57), Expect = 2.5
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Frame = -2
Query: 627 YSIADTYMYCRSWNYVWLRTDTIHSSHWRIYAESF--LKECF*IIHLRQQFITHFFSLCH 454
+S + Y+ +W+Y+W T + W+I F L+E +++ R F+L H
Sbjct: 74 FSCSPIYIKEGNWHYIWTCTSLKSNGEWKILLWKFNDLEEESEVVY-RDISNQQIFAL-H 131
Query: 453 FLNMSTQGLLQIRFSGQYVDSER*KSTGGLVSSYQE*QALCIDRIIVQKYFPFSCIVLRS 274
F++ + Q ++ R +G+ + + +S E L + + P + L S
Sbjct: 132 FISSTGQLVIVFR-NGKIAFLDPEDDKVHMSASVNESATLLQSMYVPSQANPIDAVRLAS 190
Query: 273 FFCSEINKNL*EV 235
S N N E+
Sbjct: 191 NEASGTNNNPKEI 203
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -3
Query: 644 PYTGMATASPTPTCTVVPG--IMYGFVQIRSTRATGGY 537
P GM ASP+P +PG +M ++ A GY
Sbjct: 292 PPPGMVMASPSPAAATIPGAPVMPNIPFYQTINAQNGY 329
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 442 HVQEMTKGKEMSYELLAQMDYLEAFLQETLRIYPPVARVDRICTKPYIIPGTTV 603
++++ G M ++ ++ YLEA L ++ V++++RI + PG V
Sbjct: 258 YIKDYEGGTLMQCTMIPKIKYLEANLILAIQKAAVVSKINRITRSNVVYPGLDV 311
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 130 RYLRLSFLNIEYTGELVRMLQAAKAERRSSESKK 231
R+L L+ L + YT E+V+ ++ + S ESKK
Sbjct: 410 RFLELNQLPLSYTDEVVKFIE-KNTQGHSLESKK 442
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 205 ERRSSESKKGDFLQILIDFAAKETAQNDTAKREILLDDDTIDAQS 339
E+R++E+ K + + K+T QN ++E + + ID S
Sbjct: 73 EKRAAEAAKAEVAALFNAIPKKQTPQNFLTRKEEVKESQKIDLYS 117
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 466 KEMSYELLAQMDYLEAFLQETLRIYPPVARVDRI 567
K M YELL M YL + T+ Y V +DRI
Sbjct: 1260 KAMEYELLNNMQYLNFAVGCTI-AYAVVNHIDRI 1292
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 674 SGYISSSMCSPYTGMATASPTPTCTVVPGIMYGFV 570
SG ISSS S +T AT + + GIM GF+
Sbjct: 54 SGLISSSTVSAWTWPATLLSSGAWSYTYGIMGGFM 88
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 481 HNSFLFPLSFLEHEHAGSLANQV*WPVRG 395
H +FP + H++ GS +++ W VRG
Sbjct: 1159 HEDGVFPWKLVTHDYTGSSSSE--WAVRG 1185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,017
Number of Sequences: 5004
Number of extensions: 59800
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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